# Parameters
data_name = "Nfe2l2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:22:44,885 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
memT;CD4+;A;CL |
Significance: 0.0498995 |
Significance: 0.059080799999999996 |
Th17;CD4+;A;CL |
Significance: 0.00056148 |
Significance: 0.00940599 |
BSPHL;A;CL |
Significance: 0.000265407 |
Significance: 0.0100742 |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 1.0717100000000001e-05 |
Significance: 0.013513800000000001 |
NTRPHL;A;CL |
Significance: 0.00020946799999999998 |
Significance: 0.0161442 |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.000983216 |
Significance: 0.031312 |
DC_BMD;A;CL |
Significance: 0.00213074 |
Significance: 0.000112135 |
MCRPHG;A;CL |
Significance: 0.013099000000000001 |
Significance: 0.00478157 |
Erythroblast;A;CL |
Significance: 9.08513e-08 |
Significance: 0.00036012699999999996 |
ES;MEF;A;CL |
Significance: 0.010175700000000001 |
Significance: 0.0265443 |
SML_INTSTN;A;CL |
Significance: 0.0129664 |
Significance: 0.014458700000000001 |
Heart;D;En |
Significance: 0.00266816 |
Significance: 0.012803 |
Adrenal;A;CL |
Significance: 0.00947744 |
Significance: 0.027585500000000002 |
placenta;A;CL |
Significance: 0.00817642 |
Significance: 4.89196e-05 |
BRN;OLFTRY_BLB;A;CL |
Significance: 0.0155609 |
Significance: 0.014982399999999998 |
BRN;FRNTL_CRTX;A;CL |
Significance: 0.00711879 |
Significance: 4.12932e-05 |
BRN;PTMN;A;CL |
Significance: 0.0134963 |
Significance: 0.0329847 |
BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00898853 |
Significance: 0.00199979 |
gamma_delta_TCR;A;CL |
Significance: 0.00230567 |
Significance: 0.0213381 |
gamma_delta_TCR_MCR;A;CL |
Significance: 0.012682200000000001 |
Significance: 0.0248641 |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.000118207 |
Significance: 0.05634580000000001 |
NCR+ILC3;A;CL |
Significance: 0.00414389 |
Significance: 0.0209236 |
ILC2_Nippo;A;CL |
Significance: 0.0159633 |
Significance: 0.016896 |
NCR+ILC3+IL23;A;CL |
Significance: 0.00013206899999999999 |
Significance: 0.0105653 |
ILC2;A;CL |
Significance: 0.000391954 |
Significance: 0.037082199999999996 |
Th2_nippo;A;CL |
Significance: 4.5803900000000004e-05 |
Significance: 0.0190375 |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.047808300000000005 |
Significance: 0.00412652 |
ES;v6.5;A;GEO |
Significance: 0.0013109999999999999 |
Significance: 0.0318505 |
Mammary_GLND;A;GEO |
Significance: 0.00346922 |
Significance: 0.00158927 |
ILC2+IL33+IL25;A;GEO |
Significance: 0.00119042 |
Significance: 0.0245429 |
ILC1;A;GEO |
Significance: 0.0107942 |
Significance: 0.04439269999999999 |
ILC2;A;GEO |
Significance: 0.000358965 |
Significance: 0.0128869 |
ILC3;A;GEO |
Significance: 0.00819158 |
Significance: 0.0186605 |
ILC1_AbxGRMFree;A;GEO |
Significance: 0.000726477 |
Significance: 0.042531599999999996 |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.00921168 |
Significance: 0.0153264 |
T_LCMV;CD8+;D35;A;GEO |
Significance: 4.5964399999999997e-05 |
Significance: 0.0448415 |
TSLEC_SPLND;CD8+A;GEO |
Significance: 0.0251233 |
Significance: 0.00557929 |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.013450299999999998 |
Significance: 0.00123626 |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0128607 |
Significance: 0.017743599999999998 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00990618 |
Significance: 0.00021444299999999998 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00858594 |
Significance: 0.0163414 |
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.015891 |
Significance: 0.018996799999999998 |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0205157 |
Significance: 0.0165759 |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.000425165 |
Significance: 0.00012015200000000001 |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00270721 |
Significance: 0.00950397 |
Erythroid;Ter119+;A;GEO |
Significance: 4.11244e-08 |
Significance: 1.88185e-06 |
AML;AE9a;A;GEO |
Significance: 2.30973e-07 |
Significance: 8.06607e-06 |
DC_LPS;6h;A;GEO |
Significance: 0.0038645000000000003 |
Significance: 0.018267 |
DC_LPS;2h;A;GEO |
Significance: 0.00301264 |
Significance: 0.016713099999999998 |
DC_pBMD;A;GEO |
Significance: 0.0006763510000000001 |
Significance: 0.00019109400000000002 |
SKN_EPTHL;A;GEO |
Significance: 0.0184139 |
Significance: 0.053011800000000005 |
BCK_SKN;A;GEO |
Significance: 0.00912054 |
Significance: 0.019043099999999997 |
ePyramidal_NRN;A;GEO |
Significance: 0.011733799999999999 |
Significance: 0.0230263 |
iPV_NRN;A;GEO |
Significance: 0.00293052 |
Significance: 0.0232595 |
eCortical_NRN;A;GEO |
Significance: 0.0134326 |
Significance: 0.0402586 |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.0534886 |
Significance: 0.013287 |
Corticotrope;A;GEO |
Significance: 0.0030305999999999996 |
Significance: 0.05874680000000001 |
Melanotrope;A;GEO |
Significance: 0.00814403 |
Significance: 0.058034800000000004 |
Mammary_BptfKO;A;GEO |
Significance: 0.00713061 |
Significance: 0.027419799999999998 |
EPP;A;En |
Significance: 7.91632e-08 |
Significance: 0.00145663 |
pErythroblast;A;En |
Significance: 2.17698e-07 |
Significance: 0.000310526 |
MegP;A;En |
Significance: 1.76264e-07 |
Significance: 0.00025559599999999997 |
pCMP;A;CL |
Significance: 3.2421199999999997e-07 |
Significance: 0.000267842 |
DC_LPS;4h;A;En |
Significance: 0.00034785400000000003 |
Significance: 5.9331400000000006e-05 |
DC;A;En |
Significance: 0.000437338 |
Significance: 0.00301846 |
ES;ZhBTc4;1;D;GEO |
Significance: 2.51694e-07 |
Significance: 5.88347e-06 |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.00206537 |
Significance: 0.012513600000000001 |
LNG;8wks;D;GEO |
Significance: 0.00133686 |
Significance: 0.0151109 |
3134_mammaryADNCRCNM;D;GE |
Significance: 0.0443503 |
Significance: 0.0109947 |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00468721 |
Significance: 0.00100873 |
416B_MP;CD34+;D;GEO |
Significance: 0.000428589 |
Significance: 0.00089389 |
WHL_BRN;8wks;D;GEO |
Significance: 0.00919447 |
Significance: 0.0222474 |
NIH3T3_FBROBLST;D;En |
Significance: 0.0365776 |
Significance: 0.007370100000000001 |
FBRBLST;8wks;D;En |
Significance: 0.00755462 |
Significance: 0.00991054 |
3T3-L1;FBRBLST;D;En |
Significance: 0.00417652 |
Significance: 0.0181313 |
wES;LVR;E11.5;D.;En |
Significance: 4.3295499999999995e-07 |
Significance: 0.00011904899999999999 |
LNG;8wks;D;En |
Significance: 0.000861221 |
Significance: 0.0433986 |
LNG;P0;D;En |
Significance: 0.00880159 |
Significance: 0.0258606 |
Heart;P0;D;En |
Significance: 0.00721309 |
Significance: 0.0414968 |
Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 3.70455e-05 |
Significance: 0.0395106 |
Adipose;D;En |
Significance: 0.00017077599999999998 |
Significance: 0.0248968 |
EP;c-kit+CD71+Ter119+;D;En |
Significance: 2.1430700000000003e-06 |
Significance: 0.000270808 |
416B_MP;CD34+;D;En |
Significance: 2.4313699999999997e-05 |
Significance: 0.00662931 |
Muller;P12;D;En |
Significance: 0.00825306 |
Significance: 0.020184599999999997 |
WHL_BRN;8wks;D;En |
Significance: 0.0109456 |
Significance: 0.020016 |
wES;Telenchephalon;D;En |
Significance: 0.0100284 |
Significance: 0.018611700000000002 |
LRG_INTSTN;8wks;D;En |
Significance: 0.00732991 |
Significance: 0.028295400000000002 |
STMCH;P0;D;En |
Significance: 0.00710961 |
Significance: 0.019838099999999997 |
3134_mammaryADNCRCNM;D;En |
Significance: 0.041846499999999995 |
Significance: 0.00101913 |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 9.899389999999999e-05 |
Significance: 0.0102701 |
AML;D;En |
Significance: 0.00144262 |
Significance: 0.00492768 |
CH12.LX;D;En |
Significance: 0.00616268 |
Significance: 0.0475306 |
MEF.GATA-1-ER;D;En |
Significance: 1.52535e-07 |
Significance: 2.5164200000000002e-05 |
MEL;D;En |
Significance: 2.81144e-07 |
Significance: 8.793620000000001e-05 |
NIH3T3;D;En |
Significance: 0.035689599999999995 |
Significance: 0.0125975 |
MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0142726 |
Significance: 0.020410499999999998 |
MN1;D;En |
Significance: 0.0335596 |
Significance: 0.024687999999999998 |
3T3-L1;D;En |
Significance: 0.035549800000000006 |
Significance: 0.0129474 |
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 4.92605e-08 | Absent |
naiveCD8;A;CL |
Significance: 0.00480695 | Absent |
NK_SPLND;A;CL |
Significance: 0.0109257 | Absent |
proB;A;CL |
Significance: 2.69805e-05 | Absent |
matureB;A;CL |
Significance: 0.0122421 | Absent |
B1_B;A;CL |
Significance: 0.0106471 | Absent |
plasmaB;A;CL |
Significance: 2.35391e-05 | Absent |
aB_LPS;A;CL |
Significance: 0.00018904099999999998 | Absent |
aB_LPS+IL4;A;CL |
Significance: 0.00691495 | Absent |
aB_LPS+IL21;A;CL |
Significance: 0.00650863 | Absent |
aB_LSP+a_d_dextran;A;CL |
Significance: 0.00193098 | Absent |
Mast;A;CL |
Significance: 2.72022e-06 | Absent |
ESNPHL_SPLND_BlbCA;CL |
Significance: 6.2445e-05 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.00163468 | Absent |
Tfh;A;CL |
Significance: 0.010628299999999999 | Absent |
aNonTfh;A;CL |
Significance: 0.00461042 | Absent |
aNonTfh_mut;A;CL |
Significance: 0.00314191 | Absent |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0111506 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00924956 | Absent |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00471618 | Absent |
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0178376 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.011975200000000002 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00464493 | Absent |
CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.012324799999999999 | Absent |
DP;A;CL |
Significance: 0.0005225480000000001 | Absent |
DP3a;A;CL |
Significance: 2.2098700000000002e-07 | Absent |
ES;E14;A;CL |
Significance: 0.00277981 | Absent |
LRG_INTSTN;A;CL |
Significance: 0.00524651 | Absent |
LNG;A;CL |
Significance: 0.00491879 | Absent |
Muscle;A;CL |
Significance: 0.0034054000000000003 | Absent |
Adipose;A;CL |
Significance: 0.00437481 | Absent |
Mammary;A;CL |
Significance: 0.0173755 | Absent |
STMCH;A;CL |
Significance: 0.017725900000000003 | Absent |
PNCRS;A;CL |
Significance: 0.00506118 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.00920948 | Absent |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.0225519 | Absent |
BRN;CRBLM;A;CL |
Significance: 0.00369092 | Absent |
aB;CD180;A;CL |
Significance: 0.0123448 | Absent |
LNG_TRM_HSC;A;CL |
Significance: 7.28891e-07 | Absent |
SHRT_TRM_HSC;A;CL |
Significance: 1.00468e-07 | Absent |
NK;IL2+IL12+;A;CL |
Significance: 0.00152971 | Absent |
ILC2precrsr;A;CL |
Significance: 0.0164293 | Absent |
ILC1;A;CL |
Significance: 0.0075623 | Absent |
aB_LPS+IL4_24h;A;CL |
Significance: 0.00111152 | Absent |
CH12_QNTPLE;A;CL |
Significance: 0.000139409 | Absent |
wCH12;A;CL |
Significance: 0.00177261 | Absent |
CH12;med14;A;CL |
Significance: 0.00746671 | Absent |
CLP;A;CL |
Significance: 2.0375e-05 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.00487527 | Absent |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.00595301 | Absent |
NTRPHL;A;GEO |
Significance: 8.257960000000001e-08 | Absent |
ES;J1;A;CL |
Significance: 2.2989299999999997e-05 | Absent |
ES;E14;A;GEO |
Significance: 0.00298405 | Absent |
ES;F1216;A;GEO |
Significance: 0.00425319 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 6.81285e-05 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0127195 | Absent |
ILC2_AbxGRMFree;A;GEO |
Significance: 0.00441938 | Absent |
naiveT;CD8+;A;GEO |
Significance: 0.014511000000000001 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.00358148 | Absent |
T_LCMV;CD8+;D33;A;GEO |
Significance: 0.00569707 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 0.00406688 | Absent |
TExh_SPLND;CD8+;A;GEO |
Significance: 0.00892391 | Absent |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00461509 | Absent |
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0189551 | Absent |
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0142745 | Absent |
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.017176499999999997 | Absent |
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0243574 | Absent |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.016561700000000002 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0492794 | Absent |
iNKT;A;GEO |
Significance: 0.0269387 | Absent |
prePLSM_B;A;GEO |
Significance: 0.00756134 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.00632425 | Absent |
ENDRM_ESD;A;GEO |
Significance: 0.00138587 | Absent |
GCN_PHT_RCPTR;A;GEO |
Significance: 0.0121678 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.0200257 | Absent |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0156338 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.029572300000000003 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0105154 | Absent |
NPC;F129;A;GEO |
Significance: 0.00362913 | Absent |
NPC;G4;A;GEO |
Significance: 0.0004931 | Absent |
NPC;Ch13;A;GEO |
Significance: 0.00302578 | Absent |
NPC;mE6;A;GEO |
Significance: 0.00194887 | Absent |
iVIP_NRN;A;GEO |
Significance: 0.0154531 | Absent |
ES;ZhBTc4;untreated;A;GEO |
Significance: 3.31575e-07 | Absent |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 1.3721e-05 | Absent |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 2.25101e-06 | Absent |
ES;JM8.N4;Asynch;A;GEO |
Significance: 5.11817e-05 | Absent |
ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0022965 | Absent |
pMeg;A;En |
Significance: 3.09674e-07 | Absent |
MegEP;A;CL |
Significance: 1.60064e-07 | Absent |
pGMP;A;En |
Significance: 6.49251e-07 | Absent |
ES;ZhBTc4;2;D;GEO |
Significance: 1.02625e-07 | Absent |
ES;D0;D;GEO |
Significance: 2.53938e-05 | Absent |
LVR;8wks;D;GEO |
Significance: 6.12039e-06 | Absent |
naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0167491 | Absent |
apCD4Eff;D;GEO |
Significance: 0.00671681 | Absent |
apTreg;D;GEO |
Significance: 0.00686171 | Absent |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 9.69401e-08 | Absent |
ES;E14;D;En |
Significance: 3.43679e-07 | Absent |
ES;C57BL_6J;R1;D;En |
Significance: 9.035689999999999e-08 | Absent |
KDNY;P0;D;En |
Significance: 0.01132 | Absent |
KDNY;8wks;D;En |
Significance: 7.58322e-06 | Absent |
LVR;8wks;D;En |
Significance: 0.000205037 | Absent |
LVR;P0;D;En |
Significance: 0.00135647 | Absent |
wES;LNG;E14.5;D;En |
Significance: 0.000357381 | Absent |
Heart;8wks;D;En |
Significance: 0.000121095 | Absent |
RTN;D1;D;En |
Significance: 0.0125689 | Absent |
CRBLM;D;En |
Significance: 0.0237388 | Absent |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00969553 | Absent |
Fr_BRN;P0;D;En |
Significance: 0.00595453 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.00874023 | Absent |
SKLTL_Muscle;8wks;D;En |
Significance: 7.37043e-05 | Absent |
MEL_Znc_di-cl;24h;D;En |
Significance: 7.11305e-07 | Absent |
Cell type | Modisco | Homer |
---|---|---|
wCH12_drug;A;CL | Absent |
Significance: 0.010743 |