# Parameters
data_name = "Crx"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:00:39,637 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Crx: Motif: M09577_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Crx: #9

Cell type	Modisco	Homer
RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.00173242	Pattern: motif2.motif Significance: 0.0404952
RTN;D1;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0445855	Pattern: motif5.motif Significance: 0.00382788
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.023784200000000002	Pattern: motif3.motif Significance: 0.053120900000000006 / Pattern: motif14.motif Significance: 0.0325856
ROD_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.00226474	Pattern: motif2.motif Significance: 0.0068484999999999996
ROD_PHT_RCPTR_RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.025979000000000002	Pattern: motif3.motif Significance: 0.05269730000000001
GCN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0509047	Pattern: motif2.motif Significance: 0.032059199999999996
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.000168618	Pattern: motif2.motif Significance: 0.0025169
CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0167009	Pattern: motif2.motif Significance: 0.013036500000000001
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.00647232	Pattern: motif13.motif Significance: 0.0431899

Unique Cell types only TF-MoDISco finds Crx: #8

Cell type	Modisco	Homer
eye-NRL_RTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.0183295	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_15 Significance: 0.05791810000000001	Absent
Corticotrope;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0395904	Absent
Melanotrope;A;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.05850930000000001	Absent
wES;Hnd_BRN;E11.5;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.0201127	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.026708999999999997	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.0073937	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.0145352	Absent

No Cell types only Homer finds Crx