# Parameters
data_name = "Six2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Six2: #4
| Cell type | Modisco | Homer |
|---|---|---|
| SKLTL_Muscle;8wks;D;En |
Significance: 3.7588099999999996e-14 |
Significance: 1.43516e-08 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 1.02168e-12 |
Significance: 9.93277e-10 |
| wES;FaceP;E14.5;D;En |
Significance: 5.54835e-14 |
Significance: 2.0754200000000002e-07 |
| Muscle;A;CL |
Significance: 6.90828e-14 |
Significance: 5.28329e-05 |
Unique Cell types only TF-MoDISco finds Six2: #56
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 5.34379e-12 | Absent |
| wES;limb;E11.5;D;En |
Significance: 1.2992099999999998e-10 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 4.30748e-12 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 5.3754e-14 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 5.08126e-13 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 3.59607e-09 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 9.27513e-12 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 4.14447e-11 | Absent |
| NIH3T3;D;En |
Significance: 1.24382e-10 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 5.651530000000001e-10 | Absent |
| 3T3-L1;D;En |
Significance: 3.79566e-10 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 2.53271e-10 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 1.43604e-12 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 9.8328e-12 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 2.96136e-10 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 8.14185e-11 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 1.63547e-10 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 2.75227e-11 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 2.76452e-11 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 1.25201e-11 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 5.114989999999999e-09 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 7.46676e-12 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 2.63114e-10 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 2.1443e-12 | Absent |
| NPC;F129;A;GEO |
Significance: 3.95781e-09 | Absent |
| ES;E14;A;CL |
Significance: 1.9849400000000004e-10 | Absent |
| ES;MEF;A;CL |
Significance: 9.94938e-11 | Absent |
| Corticotrope;A;GEO |
Significance: 1.17725e-13 | Absent |
| Melanotrope;A;GEO |
Significance: 1.45799e-11 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 6.26792e-05 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 2.0891800000000002e-10 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 7.55575e-11 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 3.30157e-06 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 4.7593599999999996e-09 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 1.86466e-11 | Absent |
| ES;D0;D;GEO |
Significance: 3.25571e-06 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 3.3898299999999997e-09 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 2.35051e-09 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 2.41952e-08 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 1.57081e-05 | Absent |
| ES;E14;D;En |
Significance: 7.81014e-12 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 5.50756e-08 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 8.574889999999999e-06 | Absent |
| FBRBLST;8wks;D;En |
Significance: 3.98403e-12 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 1.69141e-13 | Absent |
| KDNY;P0;D;En |
Significance: 3.99135e-11 | Absent |
| ES;J1;A;CL |
Significance: 3.63346e-09 | Absent |
| ES;E14;A;GEO |
Significance: 2.7820900000000003e-09 | Absent |
| ES;F1216;A;GEO |
Significance: 2.26928e-06 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 4.054110000000001e-09 | Absent |
| ES;v6.5;A;GEO |
Significance: 1.59502e-06 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 3.3625e-09 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 1.00967e-12 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 2.12346e-15 | Absent |
| Muller;P12;D;En |
Significance: 8.078560000000001e-05 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 9.76617e-07 | Absent |
