# Parameters
data_name = "Myc"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:21:21,231 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.024088299999999997 |
Significance: 0.052658 |
| ENDRM_ESD;A;GEO |
Significance: 0.0582073 |
Significance: 0.058613599999999995 |
| 3T3-L1;D;En |
Significance: 0.0548999 |
Significance: 0.0489231 |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.057831799999999996 |
Significance: 0.03622380000000001 |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.032187799999999996 |
Significance: 0.0461424 |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0167203 |
Significance: 0.058095100000000004 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.0402616 |
Significance: 0.0508116 |
| ISP;A;CL |
Significance: 0.0314027 |
Significance: 0.0237705 |
| LNG;A;CL |
Significance: 0.053413199999999994 |
Significance: 0.00791668 |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.05285840000000001 |
Significance: 0.0398779 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0341483 |
Significance: 0.0322184 |
| LNG;8wks;D;GEO |
Significance: 0.035713699999999994 |
Significance: 0.028848500000000003 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0488336 |
Significance: 0.0335158 |
| wES;LVR;E11.5;D.;En |
Significance: 0.0431718 |
Significance: 0.037130300000000005 |
| ES;F1216;A;GEO |
Significance: 0.0185508 |
Significance: 0.047089400000000003 |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.023526599999999998 |
Significance: 0.0456511 |
| RTN;A;GEO |
Significance: 0.017646000000000002 |
Significance: 0.0454662 |
| Adipose;D;En |
Significance: 0.0587406 |
Significance: 0.028525099999999998 |
| wES;RTN;E11.5;D;En |
Significance: 0.031687900000000005 |
Significance: 0.0579983 |
| CRBLM;D;En |
Significance: 0.043122 |
Significance: 0.0268392 |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.013014600000000001 |
Significance: 0.028779000000000002 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.05134640000000001 |
Significance: 0.0203426 |
| WHL_BRN;8wks;D;En |
Significance: 0.058423699999999995 |
Significance: 0.023480599999999997 |
| wES;Telenchephalon;D;En |
Significance: 0.028839999999999998 |
Significance: 0.021111599999999998 |
| Cell type | Modisco | Homer |
|---|---|---|
| memT;CD4+;A;CL |
Significance: 0.0258246 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0184984 | Absent |
| proB;A;CL |
Significance: 0.0207011 | Absent |
| B1_B;A;CL |
Significance: 0.0188117 | Absent |
| plasmaB;A;CL |
Significance: 0.0214688 | Absent |
| aB_LPS;A;CL |
Significance: 0.0575856 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.0269789 | Absent |
| BSPHL;A;CL |
Significance: 0.0510372 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.049251300000000005 | Absent |
| Tfh;A;CL |
Significance: 0.028758699999999998 | Absent |
| aNonTfh;A;CL |
Significance: 0.0213227 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.0158451 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.020669999999999997 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0276495 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.03027 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.028471299999999998 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0321568 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.024591 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.02754 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.016362 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0126917 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.032019 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0352535 | Absent |
| Erythroblast;A;CL |
Significance: 0.0347107 | Absent |
| DP;A;CL |
Significance: 0.058745900000000004 | Absent |
| DP3a;A;CL |
Significance: 0.0227299 | Absent |
| DP3b;A;CL |
Significance: 0.0217022 | Absent |
| ES;E14;A;CL |
Significance: 0.056491999999999994 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.0189425 | Absent |
| testis;A;CL |
Significance: 0.0382013 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.027544700000000002 | Absent |
| STMCH;A;CL |
Significance: 0.0180282 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.0137896 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0297048 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.0484889 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.0200214 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.0201246 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.024724400000000004 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.0215351 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.023871599999999996 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0563374 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.011152200000000001 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.014358100000000002 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.0311839 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.0248984 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.0173672 | Absent |
| wCH12;A;CL |
Significance: 0.0307644 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0286629 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0177484 | Absent |
| NTRPHL;A;GEO |
Significance: 0.051122900000000006 | Absent |
| ES;J1;A;CL |
Significance: 0.0347556 | Absent |
| ES;E14;A;GEO |
Significance: 0.038456199999999996 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0580452 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.028549099999999997 | Absent |
| ILC1;A;GEO |
Significance: 0.0163411 | Absent |
| ILC2;A;GEO |
Significance: 0.0212904 | Absent |
| ILC3;A;GEO |
Significance: 0.011903799999999999 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.027338099999999997 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.0333899 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.0412976 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0237364 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0415967 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.0284563 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0364044 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.038213 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.042938300000000006 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0232105 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.027184500000000004 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0243902 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.024140099999999998 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0393833 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0502755 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.033369 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0271834 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.025381599999999997 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.037378800000000004 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.045508099999999996 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0267611 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0320427 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.0240922 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.0165414 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.0213648 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0446149 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.034703500000000005 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.0432485 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.0234083 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.0154924 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0430821 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.051372 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0451254 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.059404599999999995 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.0447852 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0318666 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0500195 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0395641 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0207579 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.0367991 | Absent |
| NPC;F129;A;GEO |
Significance: 0.038535599999999996 | Absent |
| NPC;G4;A;GEO |
Significance: 0.053365800000000005 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.029041900000000002 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0357537 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.029514599999999995 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.0485087 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.049748400000000005 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0162062 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.055414099999999994 | Absent |
| pMeg;A;En |
Significance: 0.021597400000000003 | Absent |
| EPP;A;En |
Significance: 0.035142599999999996 | Absent |
| MegEP;A;CL |
Significance: 0.051479 | Absent |
| pErythroblast;A;En |
Significance: 0.0230312 | Absent |
| MegP;A;En |
Significance: 0.0190023 | Absent |
| pCMP;A;CL |
Significance: 0.055219500000000005 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.0464186 | Absent |
| pGMP;A;En |
Significance: 0.050412599999999995 | Absent |
| ES;D0;D;GEO |
Significance: 0.047908 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0561139 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0369053 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.0229417 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.05194680000000001 | Absent |
| ES;E14;D;En |
Significance: 0.0394987 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0478085 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.019644599999999998 | Absent |
| KDNY;P0;D;En |
Significance: 0.0541244 | Absent |
| KDNY;8wks;D;En |
Significance: 0.0467754 | Absent |
| LNG;8wks;D;En |
Significance: 0.046657300000000006 | Absent |
| RTN;D1;D;En |
Significance: 0.032581900000000004 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0321395 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0589523 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.0477949 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.052255899999999994 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0344492 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.029495499999999997 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.02108 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.028564599999999996 | Absent |
| STMCH;P0;D;En |
Significance: 0.0436517 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.014206299999999998 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.015562399999999999 | Absent |
| AML;D;En |
Significance: 0.0353858 | Absent |
| CH12.LX;D;En |
Significance: 0.0381839 | Absent |
| MEL;D;En |
Significance: 0.0567148 | Absent |
| NIH3T3;D;En |
Significance: 0.0142011 | Absent |
| Cell type | Modisco | Homer |
|---|---|---|
| wES;Fr_lmb;E11.5;D;En | Absent |
Significance: 0.0268416 |
| wES;FaceP;E14.5;D;En | Absent |
Significance: 0.05424059999999999 |
| LRG_INTSTN;8wks;D;En | Absent |
Significance: 0.046754000000000004 |
| B_SPLND;A;GEO | Absent |
Significance: 0.00769472 |
| DC_LPS;6h;A;GEO | Absent |
Significance: 0.0563467 |
| MTR_NRN_MN1;methyl3;D;En | Absent |
Significance: 0.0488445 |
| wES;5th_Rhmbmr;E9.5;A;GEO | Absent |
Significance: 0.0476453 |
| MCRPHG;A;CL | Absent |
Significance: 0.0553403 |
| NPC;Ch13;A;GEO | Absent |
Significance: 0.0442388 |
| Heart;D;En | Absent |
Significance: 0.047441000000000004 |
| placenta;A;CL | Absent |
Significance: 0.0411249 |
| DC;A;En | Absent |
Significance: 0.0295199 |
| ES;ZhBTc4;1;D;GEO | Absent |
Significance: 0.04672659999999999 |
| ES;ZhBTc4;2;D;GEO | Absent |
Significance: 0.023596799999999998 |
| LVR;8wks;D;GEO | Absent |
Significance: 0.021899400000000003 |
| Treg;CD4+_CD25+;D;GEO | Absent |
Significance: 0.047414 |
| NIH3T3_FBROBLST;D;En | Absent |
Significance: 0.0293065 |
| LVR;8wks;D;En | Absent |
Significance: 0.0357984 |
| Heart;8wks;D;En | Absent |
Significance: 0.05950930000000001 |
| Muller;P12;D;En | Absent |
Significance: 0.0296536 |
| Fr_BRN;P0;D;En | Absent |
Significance: 0.052968299999999996 |
| Hnd_BRN;P0;D;En | Absent |
Significance: 0.05148490000000001 |
| wES;Md_BRN;E14.4;D;En | Absent |
Significance: 0.0369305 |
| Md_BRN;D;En | Absent |
Significance: 0.058451800000000005 |