In [1]:
# Parameters
data_name = "Snai1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:34:37,953 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Snai1: Motif: M09002_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Snai1: #12

Cell typeModiscoHomer
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0106137

Pattern: motif1.motif

Significance: 0.0565764

/

Pattern: motif18.motif

Significance: 0.0454624

smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0140255

Pattern: motif13.motif

Significance: 0.042062300000000004

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0188207

Pattern: motif15.motif

Significance: 0.0570976

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.05098130000000001

Pattern: motif2.motif

Significance: 0.0139918

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0242874

Pattern: motif16.motif

Significance: 0.0480688

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.021516

Pattern: motif9.motif

Significance: 0.052487599999999995

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00382078

Pattern: motif9.motif

Significance: 0.040282

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0422182

Pattern: motif11.motif

Significance: 0.05612140000000001

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.013592600000000002

Pattern: motif17.motif

Significance: 0.0403263

DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0170666

Pattern: motif1.motif

Significance: 0.0530831

ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0507753

Pattern: motif14.motif

Significance: 0.041265699999999995

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0320157

Pattern: motif4.motif

Significance: 0.00926239

Unique Cell types only TF-MoDISco finds Snai1: #42

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0194102

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0279178

Absent
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0244199

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0148602

Absent
preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.01395

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.019976400000000002

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.031775599999999994

Absent
MN1;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.045321600000000004

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.057475

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.0319391

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.021188

/

Pattern: metacluster_0/pattern_19

Significance: 0.00685179

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.059719600000000005

/

Pattern: metacluster_0/pattern_22

Significance: 0.0323968

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0192775

/

Pattern: metacluster_0/pattern_22

Significance: 0.0369166

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0482843

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00641441

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.034833800000000005

/

Pattern: metacluster_0/pattern_13

Significance: 0.0286546

/

Pattern: metacluster_0/pattern_25

Significance: 0.0250052

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00938264

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0246329

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.006326300000000001

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0553877

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0493776

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00829637

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0485491

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.014724700000000002

Absent
Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.016446900000000004

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0350535

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.0121798

Absent
BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.0463288

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0521226

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0588839

/

Pattern: metacluster_1/pattern_10

Significance: 0.0198803

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.042651999999999995

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.034971300000000004

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.016851400000000002

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.030083299999999997

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0329357

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0533246

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.036423699999999996

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0556206

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00907555

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.054964599999999995

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0404717

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0163973

Absent
Unique Cell types only Homer finds Snai1: #19

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.032787800000000006

ES;F1216;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.043979199999999996

LNG;P0;D;EnAbsent

Pattern: motif18.motif

Significance: 0.050705400000000005

wES;LNG;E14.5;D;EnAbsent

Pattern: motif13.motif

Significance: 0.0493234

ES;ZhBTc4;2;D;GEOAbsent

Pattern: motif1.motif

Significance: 0.0331605

CD4+CD8-TCR+CD25+Foxp3+;A;CLAbsent

Pattern: motif1.motif

Significance: 0.0297182

B_SPLND;A;GEOAbsent

Pattern: motif21.motif

Significance: 0.030499900000000003

aB_LPS;A;CLAbsent

Pattern: motif1.motif

Significance: 0.054056799999999995

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.0472962

aB_LSP+a_d_dextran;A;CLAbsent

Pattern: motif2.motif

Significance: 0.040854699999999994

aB_CD40+IL4;A;CLAbsent

Pattern: motif1.motif

Significance: 0.0359168

gamma_delta_TCR_M-S-;A;CLAbsent

Pattern: motif8.motif

Significance: 0.00892111

immatureB_SPLND;CD43-_CD11b-;D;GEOAbsent

Pattern: motif1.motif

Significance: 0.0503809

Corticotrope;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.0480531

NTRPHL;A;CLAbsent

Pattern: motif10.motif

Significance: 0.0394164

Muscle;A;CLAbsent

Pattern: motif19.motif

Significance: 0.058948900000000005

T_MLD;TCR_SV40-I_CD8+;D7;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.0486797

Mammary_BptfKO;A;GEOAbsent

Pattern: motif12.motif

Significance: 0.0142546

wES;WHL_BRN;E14.5;D;EnAbsent

Pattern: motif10.motif

Significance: 0.041365