# Parameters
data_name = "Stat2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Stat2: #49
| Cell type | Modisco | Homer |
|---|---|---|
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0007915660000000001 |
Significance: 0.00183685 |
| memT;CD4+;A;CL |
Significance: 0.00421322 |
Significance: 0.00396374 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.000780146 |
Significance: 0.0483134 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.000785619 |
Significance: 0.00256616 |
| LRG_INTSTN;8wks;D;En |
Significance: 0.000262851 |
Significance: 0.00269898 |
| iNKT;A;GEO |
Significance: 0.00011335200000000001 |
Significance: 0.00556396 |
| prePLSM_B;A;GEO |
Significance: 0.000543153 |
Significance: 0.043316900000000005 |
| GC_B;A;CL |
Significance: 0.00390741 |
Significance: 0.030249599999999998 |
| plasmaB;A;CL |
Significance: 0.00074664 |
Significance: 0.0119258 |
| B_SPLND;A;GEO |
Significance: 0.00795766 |
Significance: 0.054315699999999995 |
| B;B220_CD43;A;GEO |
Significance: 0.011669200000000001 |
Significance: 0.00239102 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.000279185 |
Significance: 0.00985892 |
| DC_LPS;6h;A;GEO |
Significance: 0.0007342630000000001 |
Significance: 0.014429499999999998 |
| DC_LPS;2h;A;GEO |
Significance: 0.00087906 |
Significance: 0.00264758 |
| Tfh_mut;A;CL |
Significance: 0.000258129 |
Significance: 0.020796000000000002 |
| aNonTfh_mut;A;CL |
Significance: 0.000430069 |
Significance: 0.0149829 |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00019454299999999998 |
Significance: 0.017953900000000002 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0005959380000000001 |
Significance: 0.0217172 |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.00156908 |
Significance: 0.00176837 |
| DC_BMD;A;CL |
Significance: 7.73516e-05 |
Significance: 0.0531034 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 6.439069999999999e-05 |
Significance: 0.00201888 |
| DC_LPS;4h;A;En |
Significance: 0.000287622 |
Significance: 0.0408621 |
| pGMP;A;En |
Significance: 0.00443534 |
Significance: 0.00772577 |
| restingB;A;CL |
Significance: 0.00550988 |
Significance: 0.00874111 |
| aB;CD180;A;CL |
Significance: 0.000489214 |
Significance: 0.00990708 |
| LNG_TRM_HSC;A;CL |
Significance: 0.00194029 |
Significance: 0.00423878 |
| ILC2precrsr;A;CL |
Significance: 0.00215208 |
Significance: 0.028652099999999996 |
| immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 0.00701224 |
Significance: 0.0159467 |
| ILC1;A;CL |
Significance: 0.00133486 |
Significance: 0.0339208 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.000133678 |
Significance: 0.012629000000000001 |
| CH12_QNTPLE;A;CL |
Significance: 0.0178351 |
Significance: 0.0150149 |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.00142763 |
Significance: 0.00620507 |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.000478001 |
Significance: 0.00664201 |
| LNG;8wks;D;En |
Significance: 0.00040482699999999996 |
Significance: 0.00520903 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00156597 |
Significance: 0.0145873 |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.000614751 |
Significance: 0.0167372 |
| ILC2;A;GEO |
Significance: 0.0006609239999999999 |
Significance: 0.000948517 |
| ILC3;A;GEO |
Significance: 7.55699e-05 |
Significance: 0.00222923 |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.000211106 |
Significance: 0.000220432 |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.000183523 |
Significance: 0.00275065 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.00280838 |
Significance: 1.72364e-05 |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.00026068900000000004 |
Significance: 0.0256722 |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00034133 |
Significance: 0.000359296 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.000195936 |
Significance: 0.00270096 |
| immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 0.00687338 |
Significance: 0.055240599999999994 |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.000110528 |
Significance: 0.040198199999999996 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0006673919999999999 |
Significance: 0.00318186 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 3.39373e-05 |
Significance: 0.027964599999999996 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.000143839 |
Significance: 0.00162281 |
Unique Cell types only TF-MoDISco finds Stat2: #152
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00036210400000000003 | Absent |
| naiveCD8;A;CL |
Significance: 0.00356317 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.00225177 | Absent |
| NK_SPLND;A;CL |
Significance: 0.000275416 | Absent |
| proB;A;CL |
Significance: 0.00602768 | Absent |
| preB;A;CL |
Significance: 0.00588935 | Absent |
| immatureB;A;CL |
Significance: 0.00291631 | Absent |
| matureB;A;CL |
Significance: 0.00348489 | Absent |
| MZ_B;A;CL |
Significance: 0.01402 | Absent |
| B1_B;A;CL |
Significance: 0.00126374 | Absent |
| aB_LPS;A;CL |
Significance: 0.006857899999999999 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.00038583300000000003 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.00091878 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.00135941 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.0039759 | Absent |
| Mast;A;CL |
Significance: 0.000814035 | Absent |
| BSPHL;A;CL |
Significance: 0.000718413 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0008631169999999999 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.00103673 | Absent |
| NTRPHL;A;CL |
Significance: 0.000772417 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.00111255 | Absent |
| Tfh;A;CL |
Significance: 0.00321668 | Absent |
| aNonTfh;A;CL |
Significance: 0.000461035 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00024129900000000002 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.000248994 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.000372249 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.0005728619999999999 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00204435 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00077853 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.000562207 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.00316481 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 2.7053000000000003e-05 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.00187665 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.00143302 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00154945 | Absent |
| MCRPHG;A;CL |
Significance: 0.00368333 | Absent |
| Erythroblast;A;CL |
Significance: 0.000811583 | Absent |
| DP;A;CL |
Significance: 0.00105111 | Absent |
| DP3a;A;CL |
Significance: 0.000763566 | Absent |
| DP3b;A;CL |
Significance: 0.000409749 | Absent |
| ISP;A;CL |
Significance: 0.000939438 | Absent |
| ES;MEF;A;CL |
Significance: 0.00157537 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.00032531 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.00188995 | Absent |
| LNG;A;CL |
Significance: 0.000256182 | Absent |
| Muscle;A;CL |
Significance: 0.000313709 | Absent |
| Heart;D;En |
Significance: 0.00058277 | Absent |
| Adipose;A;CL |
Significance: 0.00165362 | Absent |
| Mammary;A;CL |
Significance: 0.00405515 | Absent |
| Adrenal;A;CL |
Significance: 0.000299316 | Absent |
| placenta;A;CL |
Significance: 0.000130856 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.00142978 | Absent |
| STMCH;A;CL |
Significance: 0.0019486 | Absent |
| PNCRS;A;CL |
Significance: 0.00102395 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.00541313 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.0381016 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00390781 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.00021088 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.000966093 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 5.45856e-05 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.0007995639999999999 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.000519342 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.00194237 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.00158811 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.00128978 | Absent |
| ILC2;A;CL |
Significance: 0.00165248 | Absent |
| Th2_nippo;A;CL |
Significance: 0.00126609 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.000514189 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0007675269999999999 | Absent |
| wCH12;A;CL |
Significance: 0.00373137 | Absent |
| CH12;med14;A;CL |
Significance: 0.00170804 | Absent |
| wCH12_drug;A;CL |
Significance: 0.0222719 | Absent |
| CLP;A;CL |
Significance: 0.00133906 | Absent |
| NTRPHL;A;GEO |
Significance: 0.000502348 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.00182394 | Absent |
| ILC1;A;GEO |
Significance: 0.00152389 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.000595697 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.00185276 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.0006498999999999999 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.000730285 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.000235098 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.000321248 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.00134089 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00103234 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.000196336 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.000418542 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.00045636 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.000848647 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.000160693 | Absent |
| aB;A;GEO |
Significance: 0.000345505 | Absent |
| preB_BMD;A;GEO |
Significance: 0.000890402 | Absent |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00324637 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.00058977 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.00019898799999999999 | Absent |
| DC_pBMD;A;GEO |
Significance: 0.00351354 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 2.83225e-05 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.000939464 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.000476215 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.000464021 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.000282957 | Absent |
| NPC;G4;A;GEO |
Significance: 0.00198554 | Absent |
| Corticotrope;A;GEO |
Significance: 0.000773307 | Absent |
| Melanotrope;A;GEO |
Significance: 4.7191800000000004e-05 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.000285559 | Absent |
| pMeg;A;En |
Significance: 0.00510187 | Absent |
| EPP;A;En |
Significance: 0.0008049789999999999 | Absent |
| MegEP;A;CL |
Significance: 0.000756407 | Absent |
| pErythroblast;A;En |
Significance: 1.9698500000000003e-06 | Absent |
| MegP;A;En |
Significance: 0.00436894 | Absent |
| pCMP;A;CL |
Significance: 0.00359352 | Absent |
| DC;A;En |
Significance: 0.000967987 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.00498478 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.00244318 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.000887042 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.00111268 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.000289247 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.000372889 | Absent |
| Treg;CD4+_CD25+;D;GEO |
Significance: 0.000863368 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.000733015 | Absent |
| apTreg;D;GEO |
Significance: 6.40394e-05 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00379642 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.000120185 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.00193512 | Absent |
| KDNY;P0;D;En |
Significance: 0.00043256800000000004 | Absent |
| KDNY;8wks;D;En |
Significance: 0.0008300000000000001 | Absent |
| LVR;8wks;D;En |
Significance: 0.00072946 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 3.05327e-05 | Absent |
| LNG;P0;D;En |
Significance: 0.00150675 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.000955588 | Absent |
| Heart;8wks;D;En |
Significance: 0.000676941 | Absent |
| Heart;P0;D;En |
Significance: 0.00150991 | Absent |
| apThEff;CD4+;8wks;D;En. |
Significance: 0.000305533 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00044525099999999997 | Absent |
| apTreg;8wk;D;En |
Significance: 0.00017896400000000002 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 1.65006e-05 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.00151305 | Absent |
| Muller;P12;D;En |
Significance: 0.0017097000000000002 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.00864142 | Absent |
| STMCH;P0;D;En |
Significance: 0.00137468 | Absent |
| Spleen;8wks;D;En |
Significance: 0.0006916 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.000854568 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.000393314 | Absent |
| A20;B-lymphoma;D;En |
Significance: 0.00428334 | Absent |
| AML;D;En |
Significance: 0.00540448 | Absent |
| CH12.LX;D;En |
Significance: 0.000520079 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.000457861 | Absent |
| MEL;D;En |
Significance: 0.00122813 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0009506580000000001 | Absent |
| NIH3T3;D;En |
Significance: 0.00169655 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00149987 | Absent |
| MN1;D;En |
Significance: 0.00101908 | Absent |
| 3T3-L1;D;En |
Significance: 0.000502662 | Absent |
