# Parameters
data_name = "Irf1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:13:58,603 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.040468800000000006 |
Significance: 0.012847200000000001 |
| memT;CD4+;A;CL |
Significance: 1.44252e-14 |
Significance: 4.51602e-05 |
| proB;A;CL |
Significance: 0.0031194000000000005 |
Significance: 0.015576300000000001 |
| preB;A;CL |
Significance: 0.00902644 |
Significance: 0.011035 |
| immatureB;A;CL |
Significance: 0.010444799999999999 |
Significance: 0.00980133 |
| matureB;A;CL |
Significance: 0.0111124 |
Significance: 0.00940342 |
| MZ_B;A;CL |
Significance: 0.000175638 |
Significance: 0.00867867 |
| B1_B;A;CL |
Significance: 0.00972904 |
Significance: 0.0125166 |
| GC_B;A;CL |
Significance: 0.011843600000000001 |
Significance: 0.008048600000000001 |
| plasmaB;A;CL |
Significance: 7.4343e-05 |
Significance: 0.0119258 |
| aB_LPS+IL4;A;CL |
Significance: 0.0107783 |
Significance: 0.0267757 |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.014987899999999998 |
Significance: 0.0305341 |
| aB_CD40+IL4;A;CL |
Significance: 0.015434999999999999 |
Significance: 0.00106295 |
| Tfh;A;CL |
Significance: 2.17087e-15 |
Significance: 0.0241909 |
| Tfh_mut;A;CL |
Significance: 2.3281799999999997e-13 |
Significance: 0.00106711 |
| aNonTfh_mut;A;CL |
Significance: 1.74485e-16 |
Significance: 0.00129667 |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 2.01021e-15 |
Significance: 0.000425765 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 2.80296e-12 |
Significance: 0.00107898 |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 7.03457e-14 |
Significance: 3.3243400000000003e-06 |
| DC_BMD;A;CL |
Significance: 0.00383014 |
Significance: 0.019506299999999997 |
| MCRPHG;A;CL |
Significance: 0.024373699999999998 |
Significance: 0.0250834 |
| DP3a;A;CL |
Significance: 1.8257300000000001e-13 |
Significance: 0.00481831 |
| restingB;A;CL |
Significance: 0.013165799999999998 |
Significance: 0.00874111 |
| aB;CD180;A;CL |
Significance: 0.0114152 |
Significance: 0.000591499 |
| LNG_TRM_HSC;A;CL |
Significance: 1.99105e-08 |
Significance: 0.00165313 |
| SHRT_TRM_HSC;A;CL |
Significance: 0.0393653 |
Significance: 0.00813507 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.00969216 |
Significance: 0.012326 |
| ILC2precrsr;A;CL |
Significance: 6.494849999999999e-16 |
Significance: 0.00349918 |
| ILC2_Nippo;A;CL |
Significance: 4.31567e-12 |
Significance: 0.0036805999999999996 |
| ILC1;A;CL |
Significance: 8.373819999999999e-12 |
Significance: 0.00975974 |
| NCR+ILC3+IL23;A;CL |
Significance: 4.31342e-15 |
Significance: 0.00035014400000000004 |
| CH12_QNTPLE;A;CL |
Significance: 0.015932299999999996 |
Significance: 0.0131314 |
| wCH12;A;CL |
Significance: 0.00385884 |
Significance: 0.0113124 |
| wCH12_drug;A;CL |
Significance: 0.000565133 |
Significance: 0.0130214 |
| CLP;A;CL |
Significance: 0.010656299999999999 |
Significance: 0.015489500000000002 |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 1.11046e-11 |
Significance: 0.00020449099999999998 |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 1.61677e-12 |
Significance: 0.000508856 |
| ILC2+IL33+IL25;A;GEO |
Significance: 7.07378e-14 |
Significance: 0.00148933 |
| ILC2;A;GEO |
Significance: 1.09003e-14 |
Significance: 0.000281814 |
| ILC3;A;GEO |
Significance: 5.17429e-12 |
Significance: 4.84033e-05 |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 4.36822e-16 |
Significance: 0.00040113199999999995 |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 1.6599599999999999e-15 |
Significance: 7.68626e-07 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 3.5255300000000006e-14 |
Significance: 4.9299800000000005e-06 |
| TEff_SPLND;CD8+;A;GEO |
Significance: 2.74275e-16 |
Significance: 0.0167153 |
| TExh_SPLND;CD8+;A;GEO |
Significance: 1.98062e-17 |
Significance: 0.000359296 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 7.162869999999999e-15 |
Significance: 0.00046400300000000005 |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 1.51746e-17 |
Significance: 0.00738752 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 6.02503e-15 |
Significance: 0.00249693 |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 5.25235e-15 |
Significance: 0.00331447 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 9.38516e-11 |
Significance: 0.00365104 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 9.75574e-15 |
Significance: 7.03104e-05 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 2.85928e-15 |
Significance: 8.328639999999999e-05 |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 6.671760000000001e-14 |
Significance: 3.46302e-05 |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 4.9681199999999995e-14 |
Significance: 0.00036559300000000005 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 2.07788e-11 |
Significance: 0.008117699999999999 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 2.97273e-14 |
Significance: 1.04818e-05 |
| iNKT;A;GEO |
Significance: 5.57808e-17 |
Significance: 0.000132825 |
| aB;A;GEO |
Significance: 0.0137194 |
Significance: 0.011170200000000002 |
| prePLSM_B;A;GEO |
Significance: 0.00598931 |
Significance: 0.00975383 |
| B_SPLND;A;GEO |
Significance: 0.0117833 |
Significance: 0.010049700000000002 |
| preB_BMD;A;GEO |
Significance: 0.0053761 |
Significance: 0.008269 |
| B;B220_CD43;A;GEO |
Significance: 0.00502542 |
Significance: 0.0101557 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00961633 |
Significance: 0.016665299999999997 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.017705000000000002 |
Significance: 0.0114469 |
| AML;AE9a;A;GEO |
Significance: 5.92504e-17 |
Significance: 0.0374717 |
| DC_LPS;6h;A;GEO |
Significance: 0.00534948 |
Significance: 0.017023 |
| DC_LPS;2h;A;GEO |
Significance: 0.00433568 |
Significance: 0.0197929 |
| DC_pBMD;A;GEO |
Significance: 0.0156469 |
Significance: 0.0283315 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.0280629 |
Significance: 2.26868e-06 |
| pMeg;A;En |
Significance: 0.00409949 |
Significance: 0.015461500000000001 |
| MegP;A;En |
Significance: 0.014639500000000001 |
Significance: 0.0168247 |
| pCMP;A;CL |
Significance: 0.0083546 |
Significance: 0.011334100000000001 |
| DC_LPS;4h;A;En |
Significance: 0.051500300000000006 |
Significance: 0.019597999999999997 |
| pGMP;A;En |
Significance: 0.00601148 |
Significance: 0.025361500000000002 |
| DC;A;En |
Significance: 0.015881700000000002 |
Significance: 0.0117728 |
| Treg;CD4+_CD25+;D;GEO |
Significance: 6.91427e-10 |
Significance: 0.010220700000000001 |
| apCD4Eff;D;GEO |
Significance: 1.06201e-14 |
Significance: 0.012664 |
| immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 0.00320247 |
Significance: 0.0322095 |
| LNG;8wks;D;En |
Significance: 3.9829500000000003e-07 |
Significance: 0.00018408 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 2.91199e-05 |
Significance: 0.00101201 |
| immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 5.81146e-05 |
Significance: 0.013435599999999999 |
| LRG_INTSTN;8wks;D;En |
Significance: 7.01627e-10 |
Significance: 6.9867e-08 |
| Spleen;8wks;D;En |
Significance: 0.0135511 |
Significance: 0.032477099999999995 |
| A20;B-lymphoma;D;En |
Significance: 3.51476e-06 |
Significance: 0.00310033 |
| AML;D;En |
Significance: 0.01496 |
Significance: 0.0218524 |
| CH12.LX;D;En |
Significance: 0.00235647 |
Significance: 0.00476027 |
| MEF.GATA-1-ER;D;En |
Significance: 0.039734 |
Significance: 0.0267492 |
| MEL;D;En |
Significance: 0.025788299999999997 |
Significance: 0.0515201 |
| MEL_Znc_di-cl;24h;D;En |
Significance: 3.92947e-13 |
Significance: 0.0373842 |
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 1.31415e-12 | Absent |
| Th17;CD4+;A;CL |
Significance: 7.21147e-13 | Absent |
| NK_SPLND;A;CL |
Significance: 7.91249e-11 | Absent |
| aB_LPS;A;CL |
Significance: 0.00463559 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.00438827 | Absent |
| Mast;A;CL |
Significance: 0.0120021 | Absent |
| BSPHL;A;CL |
Significance: 0.0102674 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.05126080000000001 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.046867599999999995 | Absent |
| NTRPHL;A;CL |
Significance: 0.00862861 | Absent |
| Tfh_LCMV;A;CL |
Significance: 1.95989e-13 | Absent |
| aNonTfh;A;CL |
Significance: 3.3011199999999994e-16 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 1.0915e-12 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 2.91663e-14 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 1.8005e-14 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 7.74674e-14 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 3.36691e-11 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 9.20941e-12 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 6.04855e-14 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 3.50134e-12 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 5.01892e-09 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 6.3984e-16 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 6.6901800000000005e-12 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 7.48539e-15 | Absent |
| Erythroblast;A;CL |
Significance: 9.26156e-08 | Absent |
| DP;A;CL |
Significance: 2.94829e-16 | Absent |
| DP3b;A;CL |
Significance: 2.3498e-15 | Absent |
| ISP;A;CL |
Significance: 1.99838e-11 | Absent |
| ES;MEF;A;CL |
Significance: 7.214399999999999e-09 | Absent |
| SML_INTSTN;A;CL |
Significance: 4.78206e-09 | Absent |
| LRG_INTSTN;A;CL |
Significance: 1.2112700000000001e-08 | Absent |
| LNG;A;CL |
Significance: 0.00731085 | Absent |
| Muscle;A;CL |
Significance: 1.50429e-06 | Absent |
| Heart;D;En |
Significance: 2.87629e-06 | Absent |
| Adipose;A;CL |
Significance: 5.9700900000000004e-09 | Absent |
| Mammary;A;CL |
Significance: 0.00405515 | Absent |
| Adrenal;A;CL |
Significance: 2.1209e-12 | Absent |
| placenta;A;CL |
Significance: 2.4670999999999998e-05 | Absent |
| SPNL_CHRD;A;CL |
Significance: 1.0815700000000001e-08 | Absent |
| STMCH;A;CL |
Significance: 2.1117599999999998e-07 | Absent |
| PNCRS;A;CL |
Significance: 5.81781e-08 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0517698 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.00212509 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 9.43805e-09 | Absent |
| BRN;CRBLM;A;CL |
Significance: 1.96994e-07 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 1.86065e-06 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 1.37282e-07 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 2.65701e-15 | Absent |
| NCR+ILC3;A;CL |
Significance: 4.72993e-11 | Absent |
| ILC2;A;CL |
Significance: 1.77397e-09 | Absent |
| Th2_nippo;A;CL |
Significance: 5.69357e-11 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.056470299999999994 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.00116683 | Absent |
| CH12;med14;A;CL |
Significance: 0.00371213 | Absent |
| NTRPHL;A;GEO |
Significance: 0.0558379 | Absent |
| Mammary_GLND;A;GEO |
Significance: 5.11111e-10 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00438496 | Absent |
| ILC1;A;GEO |
Significance: 5.6404e-15 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 7.3960899999999994e-09 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 5.40837e-11 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 5.55056e-12 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 1.35219e-12 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 5.65121e-13 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 1.59106e-13 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 6.6778e-11 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 5.5801200000000004e-15 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 7.403169999999999e-16 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 1.74155e-16 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 1.40249e-08 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 8.725229999999999e-05 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 3.88963e-06 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 3.88135e-08 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 4.6265e-09 | Absent |
| BCK_SKN;A;GEO |
Significance: 3.17628e-08 | Absent |
| NPC;G4;A;GEO |
Significance: 0.00013277799999999998 | Absent |
| Corticotrope;A;GEO |
Significance: 4.31703e-08 | Absent |
| Melanotrope;A;GEO |
Significance: 2.7093699999999998e-05 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 5.8132700000000005e-09 | Absent |
| EPP;A;En |
Significance: 5.4151300000000004e-05 | Absent |
| MegEP;A;CL |
Significance: 1.4111700000000002e-14 | Absent |
| pErythroblast;A;En |
Significance: 1.73989e-14 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 7.91091e-09 | Absent |
| LVR;8wks;D;GEO |
Significance: 2.77156e-10 | Absent |
| LNG;8wks;D;GEO |
Significance: 1.23213e-07 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 2.0621999999999998e-09 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 1.27145e-16 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 4.03507e-15 | Absent |
| apTreg;D;GEO |
Significance: 5.9939e-09 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 1.11879e-12 | Absent |
| FBRBLST;8wks;D;En |
Significance: 1.02563e-06 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 1.20409e-07 | Absent |
| KDNY;P0;D;En |
Significance: 7.16798e-10 | Absent |
| KDNY;8wks;D;En |
Significance: 1.21563e-08 | Absent |
| LVR;8wks;D;En |
Significance: 5.11237e-10 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 6.7008e-05 | Absent |
| LVR;P0;D;En |
Significance: 0.012827600000000002 | Absent |
| LNG;P0;D;En |
Significance: 1.27431e-05 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 5.02832e-06 | Absent |
| Heart;8wks;D;En |
Significance: 3.46242e-06 | Absent |
| Heart;P0;D;En |
Significance: 1.27359e-09 | Absent |
| apThEff;CD4+;8wks;D;En. |
Significance: 2.48585e-13 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 6.1126e-14 | Absent |
| apTreg;8wk;D;En |
Significance: 1.19382e-07 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 1.20399e-10 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 3.1976999999999996e-13 | Absent |
| Muller;P12;D;En |
Significance: 1.36673e-11 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.05393440000000001 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0140416 | Absent |
| STMCH;P0;D;En |
Significance: 0.000634334 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 5.60748e-10 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 2.18212e-11 | Absent |
| NIH3T3;D;En |
Significance: 1.68658e-11 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 1.09751e-09 | Absent |
| MN1;D;En |
Significance: 1.32348e-07 | Absent |
| 3T3-L1;D;En |
Significance: 6.850930000000001e-10 | Absent |