In [1]:
# Parameters
data_name = "Pou3f2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:29:10,763 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Pou3f2: Motif: M09228_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pou3f2: #9

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00667312

Pattern: motif4.motif

Significance: 0.040699599999999996

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00722115

Pattern: motif3.motif

Significance: 0.04107430000000001

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00785302

Pattern: motif9.motif

Significance: 0.0335089

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00964803

Pattern: motif13.motif

Significance: 0.0319059

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0094644

Pattern: motif4.motif

Significance: 0.0168046

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00583954

Pattern: motif25.motif

Significance: 8.767e-05

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00847953

Pattern: motif3.motif

Significance: 0.0232483

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0127357

Pattern: motif14.motif

Significance: 0.028440899999999998

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00827525

/

Pattern: metacluster_1/pattern_17

Significance: 0.00198249

Pattern: motif24.motif

Significance: 0.0267808

Unique Cell types only TF-MoDISco finds Pou3f2: #25

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0133659

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.032775599999999995

Absent
Erythroid;Ter119+;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0320635

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0189707

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.027875999999999998

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0248357

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0253435

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0119163

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.026810900000000002

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.048894

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.019893900000000003

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.05757759999999999

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.031157099999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.055491

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0542571

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_24

Significance: 5.01103e-06

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00868966

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.010154700000000001

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00895356

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00429423

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.020186700000000002

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0399621

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00483101

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00478032

/

Pattern: metacluster_0/pattern_8

Significance: 0.0558524

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_26

Significance: 0.0465689

Absent
Unique Cell types only Homer finds Pou3f2: #1

Cell typeModiscoHomer
Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0375069