# Parameters
data_name = "Sox5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:36:20,564 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Sox5: Motif: M09404_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox5: #3

Cell type	Modisco	Homer
ES;E14;A;CL	Pattern: metacluster_1/pattern_3 Significance: 0.045825599999999994	Pattern: motif7.motif Significance: 0.0171558
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.048505900000000005	Pattern: motif9.motif Significance: 0.029668200000000002
ES;v6.5;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.008460700000000002	Pattern: motif10.motif Significance: 0.059730099999999994

Unique Cell types only TF-MoDISco finds Sox5: #14

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_18 Significance: 0.0549586	Absent
ES;J1;A;CL	Pattern: metacluster_1/pattern_4 Significance: 0.00456128	Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO	Pattern: metacluster_1/pattern_11 Significance: 0.0469932	Absent
ES;F1216;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.00852115	Absent
ES;129SV_Jae_C57BL6J;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.023327599999999997	Absent
ES;ZhBTc4;2;D;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.018394099999999997	Absent
ES;D0;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.044869099999999995	Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.015237200000000001	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.0027224	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.00527535	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.04035130000000001	Absent
ES;E14;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.0556552	Absent
ES;JM8.N4;Asynch;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.0357474	Absent
ES;JM8.N4;Mitosis;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.026348200000000002	Absent

Unique Cell types only Homer finds Sox5: #2

Cell type	Modisco	Homer
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Absent	Pattern: motif3.motif Significance: 0.0589332
npES;posterior_delC;E8.5;A;GEO	Absent	Pattern: motif4.motif Significance: 0.0551452