In [1]:
# Parameters
data_name = "Cphx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:00:23,542 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cphx1: Motif: M00533_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Cphx1
Unique Cell types only TF-MoDISco finds Cphx1: #5

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.044275999999999996

/

Pattern: metacluster_0/pattern_25

Significance: 0.00612446

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0316272

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00890839

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00652325

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0366739

Absent
Unique Cell types only Homer finds Cphx1: #5

Cell typeModiscoHomer
wES;limb;E11.5;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0272802

wES;Fr_lmb;E11.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.0579026

wES;Hnd_lmb;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.00970203

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.028327999999999996

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0104428