In [1]:
# Parameters
data_name = "Nr1d2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:25:03,692 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nr1d2: Motif: M09313_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nr1d2: #7

Cell typeModiscoHomer
RTN;D1;D;En

Pattern: metacluster_0/pattern_10

Significance: 0.00175588

Pattern: motif8.motif

Significance: 0.00674251

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.0422226

Pattern: motif21.motif

Significance: 0.051922

ILC3;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00630641

Pattern: motif10.motif

Significance: 0.00642418

ILC1_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.00781422

Pattern: motif22.motif

Significance: 0.040618

iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.0128224

Pattern: motif10.motif

Significance: 0.00102255

ILC3_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00940903

Pattern: motif8.motif

Significance: 0.000975043

NCR+ILC3;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00363023

Pattern: motif5.motif

Significance: 0.000182305

Unique Cell types only TF-MoDISco finds Nr1d2: #32

Cell typeModiscoHomer
Spleen;8wks;D;En

Pattern: metacluster_1/pattern_17

Significance: 0.034737300000000006

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0394308

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_28

Significance: 0.0477268

Absent
aB_LPS+IL21;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.03595

Absent
DC_LPS;6h;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0133708

Absent
DC_LPS;2h;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.025354599999999998

Absent
MEL_Znc_di-cl;24h;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.000998959

Absent
ROD_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00714618

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.0266009

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0129572

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.04924269999999999

Absent
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0479425

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.047396100000000004

Absent
MCRPHG;A;CL

Pattern: metacluster_1/pattern_13

Significance: 0.00798777

Absent
DP;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.000894979

Absent
ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0186487

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.000315146

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_13

Significance: 0.030824900000000002

Absent
pMeg;A;En

Pattern: metacluster_1/pattern_16

Significance: 0.0180895

/

Pattern: metacluster_1/pattern_17

Significance: 0.0524403

/

Pattern: metacluster_1/pattern_20

Significance: 0.00582002

Absent
STMCH;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.0372962

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.0596

Absent
ILC2_Nippo;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00237773

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.00011326299999999999

Absent
NCR+ILC3+IL23;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.00192171

/

Pattern: metacluster_1/pattern_19

Significance: 0.0032366

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.0379755

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.009862899999999999

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.019532499999999998

Absent
ILC1;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00438004

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.016906

Absent
ILC2_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.049993300000000004

Absent
416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.04277569999999999

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.00105201

Absent
Unique Cell types only Homer finds Nr1d2: #5

Cell typeModiscoHomer
Th17;CD4+;A;CLAbsent

Pattern: motif16.motif

Significance: 0.028450599999999996

SKLTL_Muscle;8wks;D;EnAbsent

Pattern: motif11.motif

Significance: 0.032225

ILC2;A;CLAbsent

Pattern: motif17.motif

Significance: 0.03675080000000001

TSLEC_SPLND;CD8+A;GEOAbsent

Pattern: motif22.motif

Significance: 0.0536091

Heart;D;EnAbsent

Pattern: motif9.motif

Significance: 0.043774