In [1]:
# Parameters
data_name = "Isx"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:14:33,673 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Isx: Motif: M00452_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Isx: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00893137

Pattern: motif4.motif

Significance: 0.039374099999999995

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00491396

Pattern: motif3.motif

Significance: 0.019608900000000002

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.0337605

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00574147

Pattern: motif3.motif

Significance: 0.0151553

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.012185600000000001

Pattern: motif9.motif

Significance: 0.00616326

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00623043

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00545544

Pattern: motif2.motif

Significance: 0.00361345

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00468445

Pattern: motif3.motif

Significance: 0.00299396

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.05282230000000001

Pattern: motif3.motif

Significance: 0.012755599999999999

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00421285

Pattern: motif13.motif

Significance: 0.00847391

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00706318

Pattern: motif4.motif

Significance: 0.00532168

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0091789

Pattern: motif2.motif

Significance: 0.00258112

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.0119814

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.011780200000000001

Pattern: motif2.motif

Significance: 0.00239963

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.015813499999999998

Pattern: motif10.motif

Significance: 0.0136471

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0165122

Pattern: motif13.motif

Significance: 0.0093836

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.008165100000000002

Pattern: motif6.motif

Significance: 0.0132139

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0132828

Pattern: motif14.motif

Significance: 0.0053328

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013289600000000002

Pattern: motif16.motif

Significance: 0.011452500000000001

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00969875

Pattern: motif2.motif

Significance: 0.00301647

Unique Cell types only TF-MoDISco finds Isx: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.031989699999999996

/

Pattern: metacluster_0/pattern_25

Significance: 0.00355879

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0113319

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00457647

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013631299999999999

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00328194

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.047668699999999994

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0029165

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.05757759999999999

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.030195099999999996

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.011029

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0108364

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00955633

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00207529

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00668126

Absent
Unique Cell types only Homer finds Isx: #3

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0514337

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0487358