# Parameters
data_name = "Tcfl5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Tcfl5: #53
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.012381 |
Significance: 0.015653999999999998 |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00905181 |
Significance: 0.0408824 |
| Th17;CD4+;A;CL |
Significance: 0.00886931 |
Significance: 0.024926300000000002 |
| wES;FaceP;E14.5;D;En |
Significance: 0.00502637 |
Significance: 0.013498099999999999 |
| preB;A;CL |
Significance: 0.00514374 |
Significance: 0.022744 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0119073 |
Significance: 0.023677200000000002 |
| LRG_INTSTN;8wks;D;En |
Significance: 0.00721122 |
Significance: 0.0254225 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00611563 |
Significance: 0.010087 |
| DC_LPS;6h;A;GEO |
Significance: 0.00830438 |
Significance: 0.0226732 |
| BSPHL;A;CL |
Significance: 0.015258500000000001 |
Significance: 0.0246353 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00506578 |
Significance: 0.0108336 |
| aNonTfh;A;CL |
Significance: 0.0107639 |
Significance: 0.0101194 |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.00989315 |
Significance: 0.0152362 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.017417 |
Significance: 0.0254023 |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.00710034 |
Significance: 0.023009799999999997 |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.0100319 |
Significance: 0.022684 |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0109487 |
Significance: 0.0482778 |
| DC_BMD;A;CL |
Significance: 0.00448676 |
Significance: 0.0471666 |
| MCRPHG;A;CL |
Significance: 0.025986099999999998 |
Significance: 0.0352913 |
| ISP;A;CL |
Significance: 0.014802700000000002 |
Significance: 0.00980108 |
| G_NRN_P;A;GEO |
Significance: 0.0190394 |
Significance: 0.0311732 |
| ES;MEF;A;CL |
Significance: 0.00822037 |
Significance: 0.0217738 |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00562159 |
Significance: 0.0236962 |
| Heart;D;En |
Significance: 0.00551326 |
Significance: 0.0258992 |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.00431476 |
Significance: 0.0306053 |
| testis;A;CL |
Significance: 0.00961078 |
Significance: 0.0252135 |
| placenta;A;CL |
Significance: 0.00547657 |
Significance: 0.0150107 |
| pMeg;A;En |
Significance: 0.013435800000000001 |
Significance: 0.0363344 |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0155629 |
Significance: 0.0459436 |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.00509779 |
Significance: 0.0243773 |
| DC;A;En |
Significance: 0.00645811 |
Significance: 0.0295199 |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.00509943 |
Significance: 0.0148671 |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.00903556 |
Significance: 0.0242862 |
| ES;D0;D;GEO |
Significance: 0.0121 |
Significance: 0.0501777 |
| LVR;8wks;D;GEO |
Significance: 0.00510112 |
Significance: 0.0230707 |
| LNG;8wks;D;GEO |
Significance: 0.00619636 |
Significance: 0.040884199999999996 |
| gamma_delta_TCR;A;CL |
Significance: 0.012159200000000002 |
Significance: 0.0105883 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.0103243 |
Significance: 0.010723200000000002 |
| ILC2;A;CL |
Significance: 0.00705804 |
Significance: 0.030840899999999997 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0259339 |
Significance: 0.014011000000000001 |
| ES;E14;D;En |
Significance: 0.0113298 |
Significance: 0.054531100000000006 |
| ES;C57BL_6J;R1;D;En |
Significance: 0.00724237 |
Significance: 0.024940200000000003 |
| KDNY;8wks;D;En |
Significance: 0.027428700000000004 |
Significance: 0.0218299 |
| LVR;8wks;D;En |
Significance: 0.00461665 |
Significance: 0.013569999999999999 |
| wES;LVR;E11.5;D.;En |
Significance: 0.00845956 |
Significance: 0.0179787 |
| RTN;A;GEO |
Significance: 0.0115573 |
Significance: 0.03867569999999999 |
| wES;RTN;E11.5;D;En |
Significance: 0.014197299999999998 |
Significance: 0.0100334 |
| CRBLM;D;En |
Significance: 0.020183 |
Significance: 0.0200942 |
| ILC3;A;GEO |
Significance: 0.013344100000000001 |
Significance: 0.010215299999999998 |
| naiveT;CD8+;A;GEO |
Significance: 0.0171125 |
Significance: 0.011451000000000001 |
| 416B_MP;CD34+;D;En |
Significance: 0.0181824 |
Significance: 0.0253386 |
| Hnd_BRN;P0;D;En |
Significance: 0.00481508 |
Significance: 0.0218035 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.00990544 |
Significance: 0.024416 |
Unique Cell types only TF-MoDISco finds Tcfl5: #181
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.030432799999999996 | Absent |
| naiveCD8;A;CL |
Significance: 0.00530016 | Absent |
| memT;CD4+;A;CL |
Significance: 0.0135656 | Absent |
| NK_SPLND;A;CL |
Significance: 0.00669727 | Absent |
| proB;A;CL |
Significance: 0.00876447 | Absent |
| matureB;A;CL |
Significance: 0.006567699999999999 | Absent |
| B1_B;A;CL |
Significance: 0.0108772 | Absent |
| GC_B;A;CL |
Significance: 0.0187129 | Absent |
| plasmaB;A;CL |
Significance: 0.0091321 | Absent |
| aB_LPS;A;CL |
Significance: 0.0113485 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.00418764 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.00441826 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.00621386 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.00785184 | Absent |
| Mast;A;CL |
Significance: 0.0052823 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.00581282 | Absent |
| NTRPHL;A;CL |
Significance: 0.00408832 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0134334 | Absent |
| Tfh;A;CL |
Significance: 0.0144048 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.0151144 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00647391 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.011416200000000001 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.014232900000000001 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.010498 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.0148947 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.011150299999999998 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00727732 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.00798086 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.00494382 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.014424000000000001 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.00868296 | Absent |
| Erythroblast;A;CL |
Significance: 0.011744200000000002 | Absent |
| DP;A;CL |
Significance: 0.0190464 | Absent |
| DP3a;A;CL |
Significance: 0.00628241 | Absent |
| DP3b;A;CL |
Significance: 0.00928325 | Absent |
| ES;E14;A;CL |
Significance: 0.00944536 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.049823599999999996 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.00820016 | Absent |
| LNG;A;CL |
Significance: 0.016944900000000002 | Absent |
| Adipose;A;CL |
Significance: 0.00523896 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.0112368 | Absent |
| STMCH;A;CL |
Significance: 0.0134424 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.0162436 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.00576405 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00733781 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00807411 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.0103965 | Absent |
| restingB;A;CL |
Significance: 0.00643235 | Absent |
| aB;CD180;A;CL |
Significance: 0.00431453 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.00807167 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.00536647 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.00899297 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0127357 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.0571749 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.0163403 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.017096700000000003 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.0100524 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.00619723 | Absent |
| wCH12;A;CL |
Significance: 0.00542781 | Absent |
| CH12;med14;A;CL |
Significance: 0.00571925 | Absent |
| wCH12_drug;A;CL |
Significance: 0.00534271 | Absent |
| CLP;A;CL |
Significance: 0.00584444 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.011972799999999999 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.00956348 | Absent |
| NTRPHL;A;GEO |
Significance: 0.0134234 | Absent |
| ES;J1;A;CL |
Significance: 0.025944599999999998 | Absent |
| ES;E14;A;GEO |
Significance: 0.0164055 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.00897681 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00494307 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.0432872 | Absent |
| ILC1;A;GEO |
Significance: 0.0112104 | Absent |
| ILC2;A;GEO |
Significance: 0.0148781 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.00837327 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0175824 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.0184337 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.013519399999999999 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0126949 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.015349000000000002 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0141141 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.0113923 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0166848 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00547861 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0111117 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0134126 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0158269 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0114148 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.014752600000000001 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0172861 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.009905500000000001 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.016208 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0116431 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.013905700000000002 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00994817 | Absent |
| iNKT;A;GEO |
Significance: 0.0056399 | Absent |
| aB;A;GEO |
Significance: 0.00571272 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.00786298 | Absent |
| B_SPLND;A;GEO |
Significance: 0.0075317 | Absent |
| preB_BMD;A;GEO |
Significance: 0.00478845 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.00775222 | Absent |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00683834 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.01519 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.00869021 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 0.00509946 | Absent |
| DC_pBMD;A;GEO |
Significance: 0.00836033 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0165248 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.017122599999999998 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.0124089 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.00794387 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.0221446 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0136208 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0101587 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.0329411 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.017531900000000003 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.00457351 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.029104700000000004 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0357276 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.015993 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0114096 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.013068399999999999 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.00666198 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.00884329 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.013911600000000001 | Absent |
| NPC;F129;A;GEO |
Significance: 0.0184675 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.023875900000000002 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.00877783 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.0125435 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.00888025 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0356985 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.015212999999999999 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0228402 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.00571374 | Absent |
| EPP;A;En |
Significance: 0.0138746 | Absent |
| MegEP;A;CL |
Significance: 0.013677000000000002 | Absent |
| pErythroblast;A;En |
Significance: 0.0147746 | Absent |
| MegP;A;En |
Significance: 0.0135909 | Absent |
| pCMP;A;CL |
Significance: 0.012667399999999999 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.0064633 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.00539874 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00601594 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.010077899999999999 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.00750639 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.010238500000000001 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.00349745 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.00437375 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.00547684 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.00434133 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.00997921 | Absent |
| KDNY;P0;D;En |
Significance: 0.00733359 | Absent |
| LVR;P0;D;En |
Significance: 0.00425368 | Absent |
| LNG;8wks;D;En |
Significance: 0.0283961 | Absent |
| LNG;P0;D;En |
Significance: 0.00593416 | Absent |
| Heart;8wks;D;En |
Significance: 0.00532393 | Absent |
| Heart;P0;D;En |
Significance: 0.00456796 | Absent |
| Adipose;D;En |
Significance: 0.0111132 | Absent |
| RTN;D1;D;En |
Significance: 0.0244616 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00652245 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.016150499999999998 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.00442719 | Absent |
| Muller;P12;D;En |
Significance: 0.00744582 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.0076904 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.00984222 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00684938 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.00393451 | Absent |
| Md_BRN;D;En |
Significance: 0.00456718 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.0216903 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.00635512 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.0199014 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.0035479999999999995 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0100118 | Absent |
| STMCH;P0;D;En |
Significance: 0.00910117 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.00692873 | Absent |
| Spleen;8wks;D;En |
Significance: 0.00515066 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0106316 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00864383 | Absent |
| AML;D;En |
Significance: 0.012805 | Absent |
| CH12.LX;D;En |
Significance: 0.00747602 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.015847399999999998 | Absent |
| MEL;D;En |
Significance: 0.0142395 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0129319 | Absent |
| NIH3T3;D;En |
Significance: 0.0116654 | Absent |
| 3T3-L1;D;En |
Significance: 0.018547499999999998 | Absent |
Unique Cell types only Homer finds Tcfl5: #6
| Cell type | Modisco | Homer |
|---|---|---|
| wES;Fr_lmb;E11.5;D;En | Absent |
Significance: 0.055965 |
| ES;F1216;A;GEO | Absent |
Significance: 0.0177923 |
| NPC;Ch13;A;GEO | Absent |
Significance: 0.0122615 |
| A20;B-lymphoma;D;En | Absent |
Significance: 0.0209734 |
| ENDRM_ESD;A;GEO | Absent |
Significance: 0.00991028 |
| Mammary;A;CL | Absent |
Significance: 0.0257841 |
