In [1]:
# Parameters
data_name = "Foxa3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:15,737 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxa3: Motif: M09106_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxa3: #9

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0009073169999999999

Pattern: motif9.motif

Significance: 0.0298955

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.018852599999999997

/

Pattern: metacluster_0/pattern_13

Significance: 2.0635500000000003e-05

Pattern: motif7.motif

Significance: 0.00312018

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 3.1420299999999997e-06

/

Pattern: metacluster_1/pattern_18

Significance: 0.0466182

Pattern: motif16.motif

Significance: 0.047843199999999995

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00400155

Pattern: motif5.motif

Significance: 8.68807e-05

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.000978721

Pattern: motif15.motif

Significance: 0.00488025

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 1.11866e-05

Pattern: motif3.motif

Significance: 5.84748e-05

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 1.05807e-06

Pattern: motif4.motif

Significance: 0.0010062

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 1.24427e-05

Pattern: motif5.motif

Significance: 0.000403443

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000888943

Pattern: motif15.motif

Significance: 0.0575928

Unique Cell types only TF-MoDISco finds Foxa3: #23

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00138623

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00170338

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00216814

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0010812999999999999

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.000863087

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00123294

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00144589

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.000521592

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 2.83542e-06

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0007107289999999999

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00591595

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 1.77714e-05

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00044719599999999997

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.059002

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00853811

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 1.03839e-05

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00449111

/

Pattern: metacluster_1/pattern_21

Significance: 0.0469786

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00388763

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.000566859

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.015277299999999999

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.000912611

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 1.6840099999999998e-05

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.00234736

Absent
No Cell types only Homer finds Foxa3