In [1]:
# Parameters
data_name = "Nkx2-9"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:37,903 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nkx2-9: Motif: M09215_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nkx2-9: #1

Cell typeModiscoHomer
LNG;8wks;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.05462909999999999

Pattern: motif4.motif

Significance: 0.00383359

Unique Cell types only TF-MoDISco finds Nkx2-9: #4

Cell typeModiscoHomer
ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.048329500000000004

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.045266

Absent
LNG;P0;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000591788

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0425396

Absent
Unique Cell types only Homer finds Nkx2-9: #1

Cell typeModiscoHomer
ES;C57BL_6J;R1;D;EnAbsent

Pattern: motif22.motif

Significance: 0.033775