In [1]:
# Parameters
data_name = "Msx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:20:35,905 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Msx1: Motif: M00501_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Msx1: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00441471

Pattern: motif4.motif

Significance: 0.019012099999999997

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00199207

Pattern: motif5.motif

Significance: 0.0430018

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0019614999999999997

Pattern: motif3.motif

Significance: 0.00790397

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.0578678

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00435403

Pattern: motif3.motif

Significance: 0.013281799999999998

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00689901

Pattern: motif9.motif

Significance: 0.0113984

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00567005

Pattern: motif6.motif

Significance: 0.0211703

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00342275

Pattern: motif2.motif

Significance: 0.00708193

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00293499

Pattern: motif3.motif

Significance: 0.00754298

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0503588

Pattern: motif3.motif

Significance: 0.0221038

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00363535

Pattern: motif13.motif

Significance: 0.014911

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00467457

Pattern: motif4.motif

Significance: 0.00953644

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00462161

Pattern: motif2.motif

Significance: 0.00633817

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00556587

Pattern: motif2.motif

Significance: 0.00702854

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.021721400000000002

Pattern: motif10.motif

Significance: 0.029008799999999998

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0093618

Pattern: motif14.motif

Significance: 0.0114831

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.025982599999999998

Pattern: motif13.motif

Significance: 0.0203076

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00501567

Pattern: motif6.motif

Significance: 0.0220089

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00667624

Pattern: motif16.motif

Significance: 0.0235848

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00444484

Pattern: motif2.motif

Significance: 0.00687961

Unique Cell types only TF-MoDISco finds Msx1: #14

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0254202

/

Pattern: metacluster_0/pattern_25

Significance: 0.00221933

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.029360300000000002

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00766782

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00121352

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.000462395

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.05859580000000001

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.023941

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00650561

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0447468

Absent
MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.05446990000000001

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00675161

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00382325

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0042964

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.056026599999999996

Absent
Unique Cell types only Homer finds Msx1: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0419134

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0501703

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0259827

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0409827

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.018005700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.020893099999999998