# Parameters
data_name = "Hoxb13"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:33,505 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxb13: Motif: M00505_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxb13: #6

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00844814 / Pattern: metacluster_0/pattern_5 Significance: 0.00100992	Pattern: motif8.motif Significance: 0.000811764
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00845693 / Pattern: metacluster_1/pattern_13 Significance: 0.015099000000000001	Pattern: motif11.motif Significance: 0.015371600000000001
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00556621 / Pattern: metacluster_0/pattern_3 Significance: 0.0175628	Pattern: motif5.motif Significance: 0.00019270099999999998
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00218181	Pattern: motif4.motif Significance: 0.000263417
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0326613	Pattern: motif9.motif Significance: 0.055246500000000004
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.000226868	Pattern: motif3.motif Significance: 0.000273813

Unique Cell types only TF-MoDISco finds Hoxb13: #9

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00611637	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0207127	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0507665	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.055583600000000004	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0352084	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.03497569999999999	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.00510244	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.030598700000000003	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.023600299999999998	Absent

Unique Cell types only Homer finds Hoxb13: #3

Cell type	Modisco	Homer
ThMS_MEC;Aire++;A;GEO	Absent	Pattern: motif15.motif Significance: 0.0436849
Md_BRN;D;En	Absent	Pattern: motif14.motif Significance: 0.0326649
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.00200179