# Parameters
data_name = "Sox30"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:36:05,726 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Sox30: Motif: M00201_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox30: #3

Cell type	Modisco	Homer
ES;E14;A;CL	Pattern: metacluster_1/pattern_3 Significance: 0.0531485	Pattern: motif7.motif Significance: 0.0007727869999999999
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.0252298	Pattern: motif9.motif Significance: 0.0420841
ES;ZhBTc4;2;D;GEO	Pattern: metacluster_1/pattern_2 Significance: 0.03571919999999999 / Pattern: metacluster_1/pattern_5 Significance: 0.00724777	Pattern: motif7.motif Significance: 0.015510299999999998

Unique Cell types only TF-MoDISco finds Sox30: #11

Cell type	Modisco	Homer
ES;J1;A;CL	Pattern: metacluster_1/pattern_4 Significance: 0.033571199999999995	Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO	Pattern: metacluster_1/pattern_11 Significance: 0.00305221	Absent
ES;F1216;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.04008780000000001	Absent
ES;129SV_Jae_C57BL6J;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.00422423	Absent
ES;D0;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.00048619300000000005	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.041602099999999996	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.00361921 / Pattern: metacluster_1/pattern_5 Significance: 0.0402754	Absent
ES;129S1_SVImJ_CJ7;D;En	Pattern: metacluster_1/pattern_2 Significance: 0.0564431	Absent
ES;E14;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.006925100000000001	Absent
ES;C57BL_6J;R1;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0527568 / Pattern: metacluster_1/pattern_12 Significance: 0.0430166	Absent
ES;JM8.N4;Mitosis;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.00236973	Absent

No Cell types only Homer finds Sox30