In [1]:
# Parameters
data_name = "Evx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:06:27,956 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Evx1: Motif: M09174_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Evx1: #28

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000879425

/

Pattern: metacluster_0/pattern_5

Significance: 0.000230915

Pattern: motif4.motif

Significance: 0.0564384

/

Pattern: motif8.motif

Significance: 6.52686e-05

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 3.5055199999999994e-06

/

Pattern: metacluster_0/pattern_3

Significance: 0.000193479

Pattern: motif3.motif

Significance: 0.033958499999999996

/

Pattern: motif5.motif

Significance: 0.00292969

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0163785

Pattern: motif4.motif

Significance: 0.0262633

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.017357400000000002

Pattern: motif13.motif

Significance: 0.0093836

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.05475940000000001

Pattern: motif16.motif

Significance: 0.011185200000000001

wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00198446

/

Pattern: metacluster_0/pattern_22

Significance: 0.05608540000000001

/

Pattern: metacluster_0/pattern_25

Significance: 0.00355879

Pattern: motif4.motif

Significance: 0.0210477

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.00159325

/

Pattern: metacluster_0/pattern_18

Significance: 0.00124343

Pattern: motif6.motif

Significance: 0.0082164

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 8.02276e-05

Pattern: motif5.motif

Significance: 0.00279076

npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 2.0721700000000002e-05

/

Pattern: metacluster_0/pattern_7

Significance: 0.00169761

Pattern: motif7.motif

Significance: 0.0342317

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00514982

Pattern: motif9.motif

Significance: 0.00694299

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Pattern: motif3.motif

Significance: 0.0166082

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00487644

Pattern: motif13.motif

Significance: 0.0117836

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.0239654

Pattern: motif3.motif

Significance: 0.015404

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 3.35363e-07

Pattern: motif15.motif

Significance: 1.0852200000000001e-06

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00251419

Pattern: motif2.motif

Significance: 0.00326523

KDNY;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 6.42425e-07

Pattern: motif4.motif

Significance: 5.44654e-08

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00623043

Pattern: motif6.motif

Significance: 0.011233799999999999

Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 9.59681e-05

Pattern: motif17.motif

Significance: 0.0487625

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00154164

Pattern: motif2.motif

Significance: 0.00361345

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00128098

Pattern: motif3.motif

Significance: 0.00357708

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_0

Significance: 9.76554e-09

/

Pattern: metacluster_0/pattern_5

Significance: 0.00320866

Pattern: motif2.motif

Significance: 3.08367e-05

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0025138

Pattern: motif4.motif

Significance: 0.00542561

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00311898

Pattern: motif2.motif

Significance: 0.00277144

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.029966900000000005

Pattern: motif10.motif

Significance: 0.0136471

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00356381

Pattern: motif3.motif

Significance: 0.0256959

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00402398

Pattern: motif6.motif

Significance: 0.0130058

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011554799999999999

Pattern: motif14.motif

Significance: 0.0148226

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00220884

Pattern: motif2.motif

Significance: 0.00330322

Unique Cell types only TF-MoDISco finds Evx1: #25

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 3.87417e-05

Absent
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0133097

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0005673540000000001

/

Pattern: metacluster_1/pattern_13

Significance: 0.000473461

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0324214

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00380717

Absent
AML;D;En

Pattern: metacluster_1/pattern_18

Significance: 1.9481e-05

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0105947

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00995462

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00464797

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.019162000000000002

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.00225188

/

Pattern: metacluster_0/pattern_20

Significance: 0.015030400000000001

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00627547

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0309618

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0134408

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00414328

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0570164

Absent
Adrenal;A;CL

Pattern: metacluster_1/pattern_10

Significance: 2.75076e-07

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 3.13075e-05

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0531252

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_20

Significance: 3.6958699999999996e-05

Absent
CLP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.00232817

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 3.63333e-08

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0502854

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00707871

Absent
Unique Cell types only Homer finds Evx1: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0513784

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.032470599999999995

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0427586

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0124966

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839