# Parameters
data_name = "Hoxd9"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:45,005 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxd9: Motif: M03283_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxd9: #6

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0127355 / Pattern: metacluster_0/pattern_5 Significance: 0.0354755	Pattern: motif8.motif Significance: 0.0452871
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.029044099999999996 / Pattern: metacluster_1/pattern_13 Significance: 0.0297406	Pattern: motif11.motif Significance: 0.05921509999999999
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.03483680000000001 / Pattern: metacluster_0/pattern_3 Significance: 0.031043099999999997	Pattern: motif5.motif Significance: 0.00607097 / Pattern: motif13.motif Significance: 0.0508004
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00709696	Pattern: motif4.motif Significance: 0.0387977
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.029126799999999998	Pattern: motif2.motif Significance: 0.0463649
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.00284946	Pattern: motif3.motif Significance: 0.020669200000000002

Unique Cell types only TF-MoDISco finds Hoxd9: #10

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.014987700000000001	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.022631400000000003	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.043194699999999996	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.04225569999999999	Absent
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.03448590000000001	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.00805897	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.0409713	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0323332	Absent
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.018780900000000003	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0486186	Absent

Unique Cell types only Homer finds Hoxd9: #1

Cell type	Modisco	Homer
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.025142400000000002