In [1]:
# Parameters
data_name = "En2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:04:53,669 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
En2: Motif: M00484_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds En2: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00485198

Pattern: motif4.motif

Significance: 0.0159785

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00280011

Pattern: motif3.motif

Significance: 0.00607199

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.047305

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00503227

Pattern: motif3.motif

Significance: 0.0216013

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00611208

Pattern: motif9.motif

Significance: 0.00584502

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00437049

Pattern: motif6.motif

Significance: 0.00963601

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0524832

Pattern: motif7.motif

Significance: 0.0409827

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00425194

Pattern: motif2.motif

Significance: 0.0037329999999999998

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00294501

Pattern: motif3.motif

Significance: 0.00299396

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.057565099999999994

Pattern: motif3.motif

Significance: 0.0166082

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00393692

Pattern: motif13.motif

Significance: 0.00839477

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00495695

Pattern: motif4.motif

Significance: 0.00310006

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00448842

Pattern: motif2.motif

Significance: 0.00326523

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00442223

Pattern: motif2.motif

Significance: 0.00277144

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0202416

Pattern: motif10.motif

Significance: 0.0136471

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.013784000000000001

Pattern: motif14.motif

Significance: 0.00803461

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0165122

Pattern: motif13.motif

Significance: 0.0113723

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00402398

Pattern: motif6.motif

Significance: 0.0130058

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0170623

Pattern: motif16.motif

Significance: 0.011452500000000001

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0041398

Pattern: motif2.motif

Significance: 0.00313992

Unique Cell types only TF-MoDISco finds En2: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.015930200000000002

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0127158

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00304219

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0213519

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0201268

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0557841

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00311583

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0502854

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0584442

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0359099

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.052281100000000004

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0293974

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.036869400000000004

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00707871

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.059681200000000004

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0531252

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00295037

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00699794

Absent
Unique Cell types only Homer finds En2: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0369695

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.042667199999999995

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.011949