In [1]:
# Parameters
data_name = "Gbx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:10,383 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Gbx1: Motif: M03286_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gbx1: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0105187

Pattern: motif4.motif

Significance: 0.0537159

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00540789

Pattern: motif3.motif

Significance: 0.041638

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.022596599999999998

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.021761900000000004

Pattern: motif13.motif

Significance: 0.0093836

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.026303899999999998

Pattern: motif16.motif

Significance: 0.011185200000000001

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00689901

Pattern: motif9.motif

Significance: 0.00678937

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.05757759999999999

Pattern: motif7.motif

Significance: 0.0409827

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.04473169999999999

Pattern: motif3.motif

Significance: 0.0209787

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00392402

Pattern: motif13.motif

Significance: 0.00897489

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.0124966

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.006379999999999999

Pattern: motif2.motif

Significance: 0.0019278

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00703861

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00492496

Pattern: motif2.motif

Significance: 0.00237484

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.004461100000000001

Pattern: motif3.motif

Significance: 0.00221768

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00495695

Pattern: motif4.motif

Significance: 0.00410189

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00583954

Pattern: motif2.motif

Significance: 0.00143467

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.0136471

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0040579

Pattern: motif3.motif

Significance: 0.026474

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00505036

Pattern: motif6.motif

Significance: 0.0118259

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.013784000000000001

Pattern: motif14.motif

Significance: 0.0053328

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00714957

Pattern: motif2.motif

Significance: 0.00218371

Unique Cell types only TF-MoDISco finds Gbx1: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.031989699999999996

/

Pattern: metacluster_0/pattern_25

Significance: 0.00334443

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00837683

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00581568

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0102345

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00474387

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.04384469999999999

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00373105

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399621

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0279938

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0267834

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0177452

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00642325

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.04163719999999999

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00162683

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.004014

Absent
Unique Cell types only Homer finds Gbx1: #3

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0514337

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0498961