# Parameters
data_name = "Gli1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:22,857 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Gli1: Motif: M01023_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gli1: #1

Cell type	Modisco	Homer
wES;GRM;E16.5;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 0.0409777	Pattern: motif21.motif Significance: 0.056205399999999996

Unique Cell types only TF-MoDISco finds Gli1: #2

Cell type	Modisco	Homer
Adipose;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0382454	Absent
wES;Telenchephalon;D;En	Pattern: metacluster_1/pattern_1 Significance: 0.052610199999999996	Absent

Unique Cell types only Homer finds Gli1: #1

Cell type	Modisco	Homer
BRN;SNSR_MTR_CRTX;A;CL	Absent	Pattern: motif2.motif Significance: 0.053468100000000005