# Parameters
data_name = "Hoxc10"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:02,996 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxc10: Motif: M00421_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxc10: #6

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0229222 / Pattern: metacluster_0/pattern_5 Significance: 0.0150246	Pattern: motif8.motif Significance: 0.0265949
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0164489 / Pattern: metacluster_0/pattern_3 Significance: 0.0275721	Pattern: motif5.motif Significance: 0.034232599999999995
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.024275400000000003	Pattern: motif4.motif Significance: 0.0218125
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0352084	Pattern: motif2.motif Significance: 0.0463649
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.0524419	Pattern: motif15.motif Significance: 0.05654580000000001
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0334023	Pattern: motif14.motif Significance: 0.058923

Unique Cell types only TF-MoDISco finds Hoxc10: #19

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.027385400000000004	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0377432 / Pattern: metacluster_1/pattern_13 Significance: 0.027038200000000002	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.026069099999999998	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.059338800000000004	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.007747199999999999	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0171296	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0382593	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.021933900000000003	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.022794	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0573812	Absent
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.05794730000000001	Absent
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.0245558	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.0123026	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.015160299999999998	Absent
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.0372606	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.011780200000000001	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0234142	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.030568099999999997	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0474108	Absent

Unique Cell types only Homer finds Hoxc10: #2

Cell type	Modisco	Homer
wES;Hnd_BRN;E14.5;D;En	Absent	Pattern: motif3.motif Significance: 0.022898500000000002
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.022744999999999998