In [1]:
# Parameters
data_name = "Gli2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:24,901 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Gli2: Motif: M01024_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gli2: #1

Cell typeModiscoHomer
wES;GRM;E16.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.0386126

Pattern: motif21.motif

Significance: 0.056205399999999996

No Cell types only TF-MoDISco finds Gli2
Unique Cell types only Homer finds Gli2: #1

Cell typeModiscoHomer
BRN;SNSR_MTR_CRTX;A;CLAbsent

Pattern: motif2.motif

Significance: 0.051904700000000005