In [1]:
# Parameters
data_name = "Rhox6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:31:51,363 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Rhox6: Motif: M00397_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Rhox6: #18

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00195839

Pattern: motif4.motif

Significance: 0.0368469

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00160905

Pattern: motif5.motif

Significance: 0.0579026

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000933325

Pattern: motif3.motif

Significance: 0.025870099999999997

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00174051

Pattern: motif3.motif

Significance: 0.014081

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00262096

Pattern: motif9.motif

Significance: 0.0120222

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00437049

Pattern: motif6.motif

Significance: 0.0135025

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00146744

Pattern: motif2.motif

Significance: 0.00435275

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.000879637

Pattern: motif3.motif

Significance: 0.00660152

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00297684

Pattern: motif13.motif

Significance: 0.015441899999999998

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00213447

Pattern: motif4.motif

Significance: 0.00746909

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00171052

Pattern: motif2.motif

Significance: 0.00596167

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00235711

Pattern: motif2.motif

Significance: 0.00397983

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.0136471

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0093618

Pattern: motif14.motif

Significance: 0.0053328

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.017357400000000002

Pattern: motif13.motif

Significance: 0.0093836

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0008112530000000001

Pattern: motif6.motif

Significance: 0.0189803

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00263582

Pattern: motif16.motif

Significance: 0.011185200000000001

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00198644

Pattern: motif2.motif

Significance: 0.00635136

Unique Cell types only TF-MoDISco finds Rhox6: #19

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0369166

/

Pattern: metacluster_0/pattern_25

Significance: 0.003737

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00960116

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00390776

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0309658

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00256058

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00174116

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399621

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0451339

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.022274799999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0303168

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0496795

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0207081

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.000991827

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0346939

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.033016199999999996

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00223894

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00142067

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0361664

Absent
Unique Cell types only Homer finds Rhox6: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0558316

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.0255532

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.0371164

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.018005700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839