# Parameters
data_name = "A1JVI6_MOUSE"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:57:28,786 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

A1JVI6_MOUSE: Motif: M02033_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds A1JVI6_MOUSE: #2

Cell type	Modisco	Homer
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.01661	Pattern: motif13.motif Significance: 0.0376406
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0242577	Pattern: motif3.motif Significance: 0.0503974

Unique Cell types only TF-MoDISco finds A1JVI6_MOUSE: #10

Cell type	Modisco	Homer
NTRPHL;A;GEO	Pattern: metacluster_0/pattern_15 Significance: 0.041113800000000006	Absent
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.019465599999999996	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.023341	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0312959	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0427327	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0365344	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.0272877	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0221562	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0466776	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.020096	Absent

Unique Cell types only Homer finds A1JVI6_MOUSE: #4

Cell type	Modisco	Homer
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Absent	Pattern: motif8.motif Significance: 0.0358594
Mammary_BptfKO;A;GEO	Absent	Pattern: motif14.motif Significance: 0.0441925
LNG;8wks;D;En	Absent	Pattern: motif19.motif Significance: 0.026140899999999998
wES;3rd_Rhmbmr;E8.5;A;GEO	Absent	Pattern: motif9.motif Significance: 0.0415854