In [1]:
# Parameters
data_name = "Gbx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:11,444 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Gbx2: Motif: M00462_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gbx2: #22

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00868685

Pattern: motif4.motif

Significance: 0.0201361

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00683809

Pattern: motif5.motif

Significance: 0.0553951

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00675969

Pattern: motif3.motif

Significance: 0.044849400000000005

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.032441000000000005

Pattern: motif14.motif

Significance: 0.047305

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0537255

Pattern: motif3.motif

Significance: 0.0356255

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.021761900000000004

Pattern: motif13.motif

Significance: 0.014377700000000002

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0314807

Pattern: motif16.motif

Significance: 0.0168836

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00703136

Pattern: motif9.motif

Significance: 0.00969428

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0503588

Pattern: motif3.motif

Significance: 0.022734200000000003

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00734928

Pattern: motif13.motif

Significance: 0.0117836

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0597476

Pattern: motif17.motif

Significance: 0.014950299999999998

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00673965

Pattern: motif2.motif

Significance: 0.00518729

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00961374

Pattern: motif6.motif

Significance: 0.0119709

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00533477

Pattern: motif2.motif

Significance: 0.00600115

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00650055

Pattern: motif3.motif

Significance: 0.00528238

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00582761

Pattern: motif4.motif

Significance: 0.00746909

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00598414

Pattern: motif2.motif

Significance: 0.00554129

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0245048

Pattern: motif10.motif

Significance: 0.0170614

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00435403

Pattern: motif3.motif

Significance: 0.0285379

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00659998

Pattern: motif6.motif

Significance: 0.0141239

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.033019

Pattern: motif14.motif

Significance: 0.00865491

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00749245

Pattern: motif2.motif

Significance: 0.00607887

Unique Cell types only TF-MoDISco finds Gbx2: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.045279900000000005

/

Pattern: metacluster_0/pattern_25

Significance: 0.00285935

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00680081

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0102345

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00152786

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0514618

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00631577

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.053954300000000004

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399505

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0536159

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0428084

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0178768

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0317646

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0121129

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0332122

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00854929

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.014747999999999999

Absent
Unique Cell types only Homer finds Gbx2: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0230635

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0240568

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0409827

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.050433

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0130994