# Parameters
data_name = "Maz"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:18:58,712 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E11.5;D;En |
Significance: 0.00891514 |
Significance: 0.0261219 |
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.000319613 |
Significance: 0.0235209 |
| wES;FaceP;E11.5;D;En |
Significance: 0.00271153 |
Significance: 0.0395961 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.010697700000000001 |
Significance: 0.0385974 |
| plasmaB;A;CL |
Significance: 3.63646e-05 |
Significance: 0.0437025 |
| B;B220_CD43;A;GEO |
Significance: 0.0368392 |
Significance: 0.0490397 |
| Mast;A;CL |
Significance: 9.37932e-06 |
Significance: 0.0165709 |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.00371804 |
Significance: 0.044841900000000004 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0431476 |
Significance: 0.00228985 |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 1.9691600000000001e-07 |
Significance: 0.05427230000000001 |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0169892 |
Significance: 0.0331357 |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.00959932 |
Significance: 0.0101691 |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.00546952 |
Significance: 0.043581 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 6.573359999999999e-05 |
Significance: 0.040341300000000004 |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 2.9941399999999997e-06 |
Significance: 0.0394308 |
| NPC;F129;A;GEO |
Significance: 0.0192137 |
Significance: 0.029513599999999997 |
| DP;A;CL |
Significance: 3.32671e-05 |
Significance: 0.00962028 |
| iVIP_NRN;A;GEO |
Significance: 0.00854113 |
Significance: 0.025023 |
| Adrenal;A;CL |
Significance: 0.0124721 |
Significance: 0.040690699999999996 |
| MegP;A;En |
Significance: 5.7949700000000005e-05 |
Significance: 0.034737 |
| pCMP;A;CL |
Significance: 0.0525845 |
Significance: 0.039099699999999994 |
| pGMP;A;En |
Significance: 0.0141107 |
Significance: 0.0555424 |
| BRN;PTMN;A;CL |
Significance: 0.00136323 |
Significance: 0.040075400000000004 |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00711849 |
Significance: 0.0433676 |
| BRN;CRBLM;A;CL |
Significance: 2.87828e-06 |
Significance: 0.037571 |
| LVR;8wks;D;GEO |
Significance: 0.0284385 |
Significance: 0.0281375 |
| LNG_TRM_HSC;A;CL |
Significance: 0.00846172 |
Significance: 0.0425149 |
| LNG;8wks;D;GEO |
Significance: 0.0079226 |
Significance: 0.036693 |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.00748854 |
Significance: 0.0255262 |
| KDNY;P0;D;En |
Significance: 0.00186432 |
Significance: 0.031555099999999996 |
| LNG;8wks;D;En |
Significance: 0.0103521 |
Significance: 0.0325269 |
| LNG;P0;D;En |
Significance: 0.0446431 |
Significance: 0.025240400000000003 |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.00236217 |
Significance: 0.031057400000000002 |
| Heart;P0;D;En |
Significance: 0.000219795 |
Significance: 0.031010500000000003 |
| RTN;A;GEO |
Significance: 0.00176711 |
Significance: 0.0303574 |
| RTN;D1;D;En |
Significance: 0.00499945 |
Significance: 0.0224836 |
| wES;MSDRM;E11.5;D;En |
Significance: 0.00249737 |
Significance: 0.0231637 |
| Muller;P12;D;En |
Significance: 0.0120944 |
Significance: 0.0269698 |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.000185739 |
Significance: 0.042311 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.043342900000000004 |
Significance: 0.028516700000000002 |
| WHL_BRN;8wks;D;En |
Significance: 0.036507599999999994 |
Significance: 0.035756699999999995 |
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.055773199999999995 | Absent |
| naiveCD8;A;CL |
Significance: 0.0177165 | Absent |
| memT;CD4+;A;CL |
Significance: 4.34505e-06 | Absent |
| NK_SPLND;A;CL |
Significance: 0.00889021 | Absent |
| proB;A;CL |
Significance: 0.00330052 | Absent |
| preB;A;CL |
Significance: 0.00199459 | Absent |
| immatureB;A;CL |
Significance: 0.0549602 | Absent |
| B1_B;A;CL |
Significance: 0.035930800000000006 | Absent |
| GC_B;A;CL |
Significance: 0.000680387 | Absent |
| aB_LPS;A;CL |
Significance: 0.0101992 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.0131961 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.000239161 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.0506327 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.00345725 | Absent |
| BSPHL;A;CL |
Significance: 0.045462800000000005 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 6.33917e-05 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.00922753 | Absent |
| NTRPHL;A;CL |
Significance: 0.039794699999999995 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0003085 | Absent |
| Tfh;A;CL |
Significance: 0.00166312 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.00768992 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00489039 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 1.6046200000000002e-06 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.00268307 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.000394866 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.00735739 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.047789099999999994 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0136548 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.00687441 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0245588 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.00815568 | Absent |
| DP3a;A;CL |
Significance: 0.00943214 | Absent |
| DP3b;A;CL |
Significance: 9.84279e-05 | Absent |
| ISP;A;CL |
Significance: 0.010068500000000001 | Absent |
| ES;MEF;A;CL |
Significance: 1.80681e-05 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.037054699999999996 | Absent |
| LRG_INTSTN;A;CL |
Significance: 5.6283900000000005e-05 | Absent |
| Muscle;A;CL |
Significance: 0.010078100000000001 | Absent |
| Heart;D;En |
Significance: 0.00796301 | Absent |
| Adipose;A;CL |
Significance: 0.0103314 | Absent |
| Mammary;A;CL |
Significance: 0.0177838 | Absent |
| testis;A;CL |
Significance: 0.000268464 | Absent |
| placenta;A;CL |
Significance: 3.1552099999999997e-06 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.00100291 | Absent |
| STMCH;A;CL |
Significance: 0.00018801099999999997 | Absent |
| PNCRS;A;CL |
Significance: 0.0100389 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.014088999999999999 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.000246457 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.000633056 | Absent |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.00541482 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0170312 | Absent |
| restingB;A;CL |
Significance: 0.00034144199999999996 | Absent |
| aB;CD180;A;CL |
Significance: 0.00392689 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.045782199999999995 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0401274 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0317285 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.000519604 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.00718713 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.00977189 | Absent |
| ILC1;A;CL |
Significance: 0.00788962 | Absent |
| ILC2;A;CL |
Significance: 0.00061462 | Absent |
| Th2_nippo;A;CL |
Significance: 0.026888299999999997 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.023165099999999997 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0001041 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.00033814699999999996 | Absent |
| wCH12;A;CL |
Significance: 0.00374969 | Absent |
| CH12;med14;A;CL |
Significance: 0.00424401 | Absent |
| wCH12_drug;A;CL |
Significance: 0.00504705 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 1.27895e-05 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 2.82529e-06 | Absent |
| NTRPHL;A;GEO |
Significance: 0.00325044 | Absent |
| ES;J1;A;CL |
Significance: 0.0527896 | Absent |
| ES;E14;A;GEO |
Significance: 4.77211e-07 | Absent |
| ES;F1216;A;GEO |
Significance: 3.5530300000000005e-06 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.00109364 | Absent |
| Mammary_GLND;A;GEO |
Significance: 1.74928e-05 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00175528 | Absent |
| ILC2;A;GEO |
Significance: 0.017750799999999997 | Absent |
| ILC3;A;GEO |
Significance: 0.00715357 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0387715 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0171195 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.012415700000000002 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.00118752 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.00688011 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0441423 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 1.25693e-05 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.022177799999999998 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.00685013 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0392524 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.00664909 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.00789282 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00017758 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0205303 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0252673 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.007070100000000001 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0458413 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.035644800000000004 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0087604 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00944185 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00143596 | Absent |
| aB;A;GEO |
Significance: 0.0416191 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0573677 | Absent |
| B_SPLND;A;GEO |
Significance: 0.00393758 | Absent |
| preB_BMD;A;GEO |
Significance: 0.00023999 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.00561243 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.0300142 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.035976 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 5.34199e-05 | Absent |
| DC_pBMD;A;GEO |
Significance: 0.044050900000000004 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 3.53265e-05 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0135387 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.0093863 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.000290062 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.00924568 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.0203369 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 2.32965e-05 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.000147973 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.00175816 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.00114072 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.000934758 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.00222452 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 2.0902199999999998e-05 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0347082 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 1.7096699999999997e-07 | Absent |
| NPC;G4;A;GEO |
Significance: 0.010297 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.00889702 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.000111579 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.00181566 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.000863952 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 1.3721600000000001e-05 | Absent |
| Corticotrope;A;GEO |
Significance: 0.0201548 | Absent |
| Melanotrope;A;GEO |
Significance: 0.00998155 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 2.195e-05 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.00802728 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 3.63948e-05 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0300258 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 7.20372e-05 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.0148107 | Absent |
| EPP;A;En |
Significance: 0.0287805 | Absent |
| MegEP;A;CL |
Significance: 0.0488735 | Absent |
| pErythroblast;A;En |
Significance: 0.000948759 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.0259837 | Absent |
| DC;A;En |
Significance: 0.0390926 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 1.64351e-07 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.000158572 | Absent |
| ES;D0;D;GEO |
Significance: 0.00709016 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.020522400000000003 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.016972900000000003 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.015121100000000002 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.00148535 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.00228284 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.000141939 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0552587 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 1.00681e-06 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.0243369 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.00763648 | Absent |
| Heart;8wks;D;En |
Significance: 0.0156333 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.00018631599999999998 | Absent |
| CRBLM;D;En |
Significance: 0.00706364 | Absent |
| apThEff;CD4+;8wks;D;En. |
Significance: 0.018083000000000002 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0388673 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 3.94415e-07 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.00168342 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.00516687 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00903731 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 1.41852e-06 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.0490364 | Absent |
| Md_BRN;D;En |
Significance: 0.00214132 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.00128785 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.0289769 | Absent |
| wES;limb;E14.5;D;En |
Significance: 3.1990100000000004e-05 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 1.1049400000000001e-05 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 2.57519e-05 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.00177045 | Absent |
| STMCH;P0;D;En |
Significance: 0.00516233 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 1.03374e-05 | Absent |
| Spleen;8wks;D;En |
Significance: 0.0518159 | Absent |
| A20;B-lymphoma;D;En |
Significance: 0.0088 | Absent |
| AML;D;En |
Significance: 0.0547706 | Absent |
| CH12.LX;D;En |
Significance: 0.040404 | Absent |
| MEL;D;En |
Significance: 0.0135958 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.010115299999999999 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00218438 | Absent |
| MN1;D;En |
Significance: 1.79661e-05 | Absent |
| 3T3-L1;D;En |
Significance: 0.0363338 | Absent |
| Cell type | Modisco | Homer |
|---|---|---|
| 416B;HMTP_SPNSN;CD34+;D;En | Absent |
Significance: 0.042360699999999994 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO | Absent |
Significance: 0.0305083 |
| Tfh_mut;A;CL | Absent |
Significance: 0.0385798 |
| pMeg;A;En | Absent |
Significance: 0.0430793 |
| KDNY;8wks;D;En | Absent |
Significance: 0.0359399 |