In [1]:
# Parameters
data_name = "Lbx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:16:38,115 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Lbx2: Motif: M00465_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Lbx2: #18

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000215574

Pattern: motif4.motif

Significance: 0.00858817

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000134401

Pattern: motif5.motif

Significance: 0.030745599999999994

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000132104

Pattern: motif3.motif

Significance: 0.00607199

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0020622

Pattern: motif3.motif

Significance: 0.014081

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00135904

Pattern: motif9.motif

Significance: 0.00899313

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00567005

Pattern: motif6.motif

Significance: 0.0135025

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00101796

Pattern: motif2.motif

Significance: 0.00400243

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00036333

Pattern: motif3.motif

Significance: 0.00523812

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00487644

Pattern: motif13.motif

Significance: 0.015007

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00212854

Pattern: motif4.motif

Significance: 0.00542561

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.000768605

Pattern: motif2.motif

Significance: 0.00403467

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00041474599999999996

Pattern: motif2.motif

Significance: 0.00397983

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0286139

Pattern: motif10.motif

Significance: 0.0164003

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.00451696

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0242378

Pattern: motif13.motif

Significance: 0.011833100000000001

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0005397080000000001

Pattern: motif6.motif

Significance: 0.0154559

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00313145

Pattern: motif16.motif

Significance: 0.0150715

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00042388800000000003

Pattern: motif2.motif

Significance: 0.00473719

Unique Cell types only TF-MoDISco finds Lbx2: #19

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0254202

/

Pattern: metacluster_0/pattern_25

Significance: 0.00355879

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0103002

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00398197

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00124343

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.000197315

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399505

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0482801

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0263468

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0317732

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0534631

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00266261

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.000579601

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0346939

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0332122

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00316383

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00220586

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.028922399999999997

Absent
Unique Cell types only Homer finds Lbx2: #8

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0498961

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0356255

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0240568

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0198388

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.026036200000000002

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.0371164

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.018005700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.012446899999999999