In [1]:
# Parameters
data_name = "Barhl1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:58:18,703 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Barhl1: Motif: M00433_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Barhl1: #17

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0120315

Pattern: motif4.motif

Significance: 0.030235400000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0068619

Pattern: motif3.motif

Significance: 0.0586126

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0185434

Pattern: motif9.motif

Significance: 0.024760499999999998

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.047829

Pattern: motif6.motif

Significance: 0.02008

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00687052

Pattern: motif2.motif

Significance: 0.00995555

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.007184

Pattern: motif3.motif

Significance: 0.00945188

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.058614099999999995

Pattern: motif3.motif

Significance: 0.0342721

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0393399

Pattern: motif13.motif

Significance: 0.0379766

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0152568

Pattern: motif4.motif

Significance: 0.0187053

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.010789100000000001

Pattern: motif2.motif

Significance: 0.0157649

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.0353452

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.012521899999999999

Pattern: motif2.motif

Significance: 0.0159511

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.029966900000000005

Pattern: motif10.motif

Significance: 0.025434400000000003

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0569952

Pattern: motif13.motif

Significance: 0.026374

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0182263

Pattern: motif6.motif

Significance: 0.020945

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0442429

Pattern: motif14.motif

Significance: 0.056552599999999995

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.010471799999999998

Pattern: motif2.motif

Significance: 0.0232125

Unique Cell types only TF-MoDISco finds Barhl1: #12

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00699712

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.051202

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00554616

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00540509

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00631577

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0460778

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.031964400000000004

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0437603

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0251487

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0496159

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0488875

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0366309

Absent
Unique Cell types only Homer finds Barhl1: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0562368

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0360655

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0427586

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0198151

wES;3rd_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif16.motif

Significance: 0.026639799999999998