In [1]:
# Parameters
data_name = "Arnt2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:57:28,778 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Arnt2: Motif: M01720_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Arnt2: #3

Cell typeModiscoHomer
DC_LPS;6h;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0412284

Pattern: motif12.motif

Significance: 0.0226732

DC;A;En

Pattern: metacluster_1/pattern_11

Significance: 0.0430033

Pattern: motif13.motif

Significance: 0.0188654

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0571987

Pattern: motif16.motif

Significance: 0.042670599999999996

Unique Cell types only TF-MoDISco finds Arnt2: #31

Cell typeModiscoHomer
matureB;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.0481427

Absent
aB;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.04524469999999999

Absent
Spleen;8wks;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.053082000000000004

Absent
SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.059955600000000005

Absent
preB_BMD;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0518717

Absent
MCRPHG_BMD.UnStmltd;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.042062699999999995

Absent
aB_LPS+IL21;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0568584

Absent
MCRPHG_BMD.LPD_Stmltd;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.058569

Absent
Mast;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0548045

Absent
DC_LPS;2h;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.04181169999999999

Absent
ESNPHL_ex-vivo_BlbC;A;CL

Pattern: metacluster_0/pattern_10

Significance: 0.0488588

Absent
DC_pBMD;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0317803

Absent
NTRPHL;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0420894

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.059674

Absent
DC_BMD;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.043278500000000004

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.053695299999999994

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.0503331

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_12

Significance: 0.058339199999999994

Absent
ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.03998

Absent
restingB;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.05534209999999999

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0594946

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.05818969999999999

Absent
aB_LPS+IL4+Oligomycin_24h;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.055104099999999996

Absent
CH12_QNTPLE;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.059635099999999996

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.057626300000000005

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.045138

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.037586800000000004

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.0475505

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0398786

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0574443

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0440535

Absent
Unique Cell types only Homer finds Arnt2: #5

Cell typeModiscoHomer
ES;F1216;A;GEOAbsent

Pattern: motif19.motif

Significance: 0.047089400000000003

wES;posterior;1;E8.5;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.0428002

A20;B-lymphoma;D;EnAbsent

Pattern: motif13.motif

Significance: 0.013903799999999997

ES;ZhBTc4;untreated;A;GEOAbsent

Pattern: motif21.motif

Significance: 0.0518755

Heart;D;EnAbsent

Pattern: motif14.motif

Significance: 0.0413824