# Parameters
data_name = "Gli3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:27,450 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Gli3: Motif: M01022_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gli3: #1

Cell type	Modisco	Homer
BRN;SNSR_MTR_CRTX;A;CL	Pattern: metacluster_1/pattern_0 Significance: 0.056634199999999996	Pattern: motif2.motif Significance: 0.0202743

Unique Cell types only TF-MoDISco finds Gli3: #9

Cell type	Modisco	Homer
wES;LVR;E11.5;D.;En	Pattern: metacluster_1/pattern_6 Significance: 0.050829	Absent
BRN;FRNTL_CRTX;A;CL	Pattern: metacluster_1/pattern_1 Significance: 0.0418161	Absent
BRN;PTMN;A;CL	Pattern: metacluster_1/pattern_0 Significance: 0.0497985	Absent
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL	Pattern: metacluster_1/pattern_7 Significance: 0.036666199999999996	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.045843800000000004	Absent
wES;GRM;E16.5;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 0.0282348	Absent
WHL_BRN;8wks;D;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.05738580000000001	Absent
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO	Pattern: metacluster_1/pattern_3 Significance: 0.054142499999999996	Absent
wES;Telenchephalon;D;En	Pattern: metacluster_1/pattern_1 Significance: 0.0470741	Absent

Unique Cell types only Homer finds Gli3: #1

Cell type	Modisco	Homer
ePyramidal_NRN;A;GEO	Absent	Pattern: motif1.motif Significance: 0.053984500000000005