# Parameters
data_name = "Zbtb1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:48:39,123 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.0454163 |
Significance: 0.0434138 |
| Th17;CD4+;A;CL |
Significance: 0.05739059999999999 |
Significance: 0.0216247 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0472366 |
Significance: 0.030864999999999997 |
| wES;FaceP;E14.5;D;En |
Significance: 0.0415652 |
Significance: 0.016698400000000002 |
| immatureB;A;CL |
Significance: 0.0558078 |
Significance: 0.0439842 |
| matureB;A;CL |
Significance: 0.0368643 |
Significance: 0.013322799999999997 |
| prePLSM_B;A;GEO |
Significance: 0.0529472 |
Significance: 0.0107442 |
| B_SPLND;A;GEO |
Significance: 0.051925400000000003 |
Significance: 0.048817599999999996 |
| Spleen;8wks;D;En |
Significance: 0.046383600000000004 |
Significance: 0.0433269 |
| B;B220_CD43;A;GEO |
Significance: 0.04742419999999999 |
Significance: 0.054229599999999996 |
| aB_LPS+IL4;A;CL |
Significance: 0.05666 |
Significance: 0.021162 |
| aB_LPS+IL21;A;CL |
Significance: 0.056662199999999996 |
Significance: 0.052827 |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0520778 |
Significance: 0.0254452 |
| AML;AE9a;A;GEO |
Significance: 0.0590304 |
Significance: 0.0167523 |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.035234800000000004 |
Significance: 0.0319819 |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.049935400000000005 |
Significance: 0.0566145 |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.05515409999999999 |
Significance: 0.0184924 |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.058026699999999994 |
Significance: 0.043624800000000005 |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.0408329 |
Significance: 0.0466794 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.0555067 |
Significance: 0.0491037 |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.058558400000000004 |
Significance: 0.0512808 |
| MCRPHG;A;CL |
Significance: 0.05775790000000001 |
Significance: 0.0195291 |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.033343 |
Significance: 0.0182405 |
| Mammary;A;CL |
Significance: 0.0483543 |
Significance: 0.012938 |
| Mammary_BptfKO;A;GEO |
Significance: 0.0438516 |
Significance: 0.017680200000000004 |
| pMeg;A;En |
Significance: 0.0596278 |
Significance: 0.0486852 |
| MegEP;A;CL |
Significance: 0.0509541 |
Significance: 0.022423699999999998 |
| eye-NRL_RTN;A;CL |
Significance: 0.0478053 |
Significance: 0.017603 |
| pCMP;A;CL |
Significance: 0.0562096 |
Significance: 0.0429049 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0507686 |
Significance: 0.039020400000000004 |
| gamma_delta_TCR;A;CL |
Significance: 0.05404069999999999 |
Significance: 0.00674836 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.0495631 |
Significance: 0.018781700000000002 |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0474621 |
Significance: 0.0389242 |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0526683 |
Significance: 0.054205899999999994 |
| ES;E14;D;En |
Significance: 0.0493746 |
Significance: 0.0532721 |
| LVR;P0;D;En |
Significance: 0.05517180000000001 |
Significance: 0.0454126 |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.0411409 |
Significance: 0.0465685 |
| ES;v6.5;A;GEO |
Significance: 0.041526 |
Significance: 0.0101713 |
| wES;LNG;E14.5;D;En |
Significance: 0.0597557 |
Significance: 0.0540663 |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0585754 |
Significance: 0.054939 |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0549101 |
Significance: 0.0369284 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.054839 |
Significance: 0.027230200000000003 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.041725599999999995 |
Significance: 0.036661 |
| Cell type | Modisco | Homer |
|---|---|---|
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0540577 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.049244300000000005 | Absent |
| MZ_B;A;CL |
Significance: 0.051381100000000006 | Absent |
| B1_B;A;CL |
Significance: 0.0463942 | Absent |
| AML;D;En |
Significance: 0.0547832 | Absent |
| MEL;D;En |
Significance: 0.040496199999999996 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0431008 | Absent |
| aNonTfh;A;CL |
Significance: 0.055245100000000005 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0408086 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0537304 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.05813430000000001 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0572299 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.053101 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.0471364 | Absent |
| Muscle;A;CL |
Significance: 0.041348699999999995 | Absent |
| Heart;D;En |
Significance: 0.0498699 | Absent |
| placenta;A;CL |
Significance: 0.0370423 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0447663 | Absent |
| ES;D0;D;GEO |
Significance: 0.0416069 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.05436030000000001 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.0485875 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0535879 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0464527 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.039052300000000005 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.0494026 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.0367532 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.041467699999999996 | Absent |
| Muller;P12;D;En |
Significance: 0.055273 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0522375 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0510188 | Absent |
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL | Absent |
Significance: 0.053895500000000006 |
| naiveCD8;A;CL | Absent |
Significance: 0.033403699999999995 |
| proB;A;CL | Absent |
Significance: 0.050038900000000004 |
| preB;A;CL | Absent |
Significance: 0.042076300000000004 |
| GC_B;A;CL | Absent |
Significance: 0.012352600000000002 |
| aB_LPS;A;CL | Absent |
Significance: 0.0353518 |
| aB_LSP+a_d_dextran;A;CL | Absent |
Significance: 0.0569644 |
| aB_CD40+IL4;A;CL | Absent |
Significance: 0.048258300000000004 |
| Mast;A;CL | Absent |
Significance: 0.0467412 |
| BSPHL;A;CL | Absent |
Significance: 0.0207725 |
| ESNPHL_ex-vivo_BlbC;A;CL | Absent |
Significance: 0.0560366 |
| ESNPHL_SPLND_BlbCA;CL | Absent |
Significance: 0.05277769999999999 |
| Tfh_LCMV;A;CL | Absent |
Significance: 0.040843800000000006 |
| Tfh;A;CL | Absent |
Significance: 0.051669900000000005 |
| Tfh_mut;A;CL | Absent |
Significance: 0.032326299999999995 |
| aNonTfh_mut;A;CL | Absent |
Significance: 0.049117400000000005 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL | Absent |
Significance: 0.0142812 |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL | Absent |
Significance: 0.048994300000000005 |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL | Absent |
Significance: 0.0459724 |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL | Absent |
Significance: 0.0591611 |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL | Absent |
Significance: 0.0391142 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL | Absent |
Significance: 0.0395073 |
| Erythroblast;A;CL | Absent |
Significance: 0.0309465 |
| DP;A;CL | Absent |
Significance: 0.0578826 |
| DP3a;A;CL | Absent |
Significance: 0.040256400000000005 |
| DP3b;A;CL | Absent |
Significance: 0.026122500000000003 |
| ISP;A;CL | Absent |
Significance: 0.0360214 |
| Adipose;A;CL | Absent |
Significance: 0.0268673 |
| Adrenal;A;CL | Absent |
Significance: 0.0519533 |
| testis;A;CL | Absent |
Significance: 0.0308367 |
| SPNL_CHRD;A;CL | Absent |
Significance: 0.05770700000000001 |
| STMCH;A;CL | Absent |
Significance: 0.0564568 |
| PNCRS;A;CL | Absent |
Significance: 0.0510253 |
| BRN;FRNTL_CRTX;A;CL | Absent |
Significance: 0.04137419999999999 |
| restingB;A;CL | Absent |
Significance: 0.0587454 |
| ILC2_Nippo;A;CL | Absent |
Significance: 0.0203585 |
| ILC1;A;CL | Absent |
Significance: 0.013466299999999999 |
| Th2_nippo;A;CL | Absent |
Significance: 0.030508499999999997 |
| aB_LPS+IL4+Oligomycin_24h;A;CL | Absent |
Significance: 0.038601300000000005 |
| CH12_QNTPLE;A;CL | Absent |
Significance: 0.044205 |
| CH12;med14;A;CL | Absent |
Significance: 0.0505056 |
| CLP;A;CL | Absent |
Significance: 0.043313 |
| NTRPHL;A;GEO | Absent |
Significance: 0.0417439 |
| ES;E14;A;GEO | Absent |
Significance: 0.055258 |
| ES;F1216;A;GEO | Absent |
Significance: 0.0458251 |
| Mammary_GLND;A;GEO | Absent |
Significance: 0.031876999999999996 |
| ILC1;A;GEO | Absent |
Significance: 0.029463200000000002 |
| ILC3;A;GEO | Absent |
Significance: 0.050218 |
| ILC2_AbxGRMFree;A;GEO | Absent |
Significance: 0.0344269 |
| ILC3_AbxGRMFree;A;GEO | Absent |
Significance: 0.0335952 |
| T_LCMV;CD8+;D8;A;GEO | Absent |
Significance: 0.0475444 |
| T_LCMV;CD8+;D33;A;GEO | Absent |
Significance: 0.0375041 |
| TEff_SPLND;CD8+;A;GEO | Absent |
Significance: 0.0578974 |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO | Absent |
Significance: 0.016866700000000002 |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO | Absent |
Significance: 0.051053100000000004 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.010706499999999999 |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO | Absent |
Significance: 0.047340600000000004 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.0493945 |
| iNKT;A;GEO | Absent |
Significance: 0.05766569999999999 |
| preB_BMD;A;GEO | Absent |
Significance: 0.054596500000000006 |
| MCRPHG_BMD.UnStmltd;A;GEO | Absent |
Significance: 0.0478596 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO | Absent |
Significance: 0.0489278 |
| Erythroid;Ter119+;A;GEO | Absent |
Significance: 0.0482228 |
| DC_pBMD;A;GEO | Absent |
Significance: 0.0241962 |
| ENDRM_ESD;A;GEO | Absent |
Significance: 0.0224847 |
| ROD_PHT_RCPTR_RTN;A;GEO | Absent |
Significance: 0.038346 |
| GCN_PHT_RCPTR;A;GEO | Absent |
Significance: 0.0220415 |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO | Absent |
Significance: 0.0527586 |
| wES;3rd_Rhmbmr;E8.5;A;GEO | Absent |
Significance: 0.0188716 |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO | Absent |
Significance: 0.0145734 |
| wES;posterior;2;E9.5;A;GEO | Absent |
Significance: 0.046600300000000004 |
| npES;posterior_delA;E8.5;A;GEO | Absent |
Significance: 0.0193657 |
| wES.CRNL_NRL_CRST;E10.5;A;GEO | Absent |
Significance: 0.016601599999999998 |
| NPC;Ch13;A;GEO | Absent |
Significance: 0.0546401 |
| G_NRN_P;A;GEO | Absent |
Significance: 0.014555700000000001 |
| ThMS_MEC;Aire++;A;GEO | Absent |
Significance: 0.00979424 |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO | Absent |
Significance: 0.0150197 |
| ES;JM8.N4;Mitosis;A;GEO | Absent |
Significance: 0.028982400000000002 |
| EPP;A;En | Absent |
Significance: 0.012809399999999999 |
| pErythroblast;A;En | Absent |
Significance: 0.0513086 |
| MegP;A;En | Absent |
Significance: 0.0423649 |
| pGMP;A;En | Absent |
Significance: 0.052919100000000004 |
| DC;A;En | Absent |
Significance: 0.016948500000000002 |
| ES;ZhBTc4;1;D;GEO | Absent |
Significance: 0.0493437 |
| NIH3T3_FBROBLST;D;GEO | Absent |
Significance: 0.00584325 |
| LNG;8wks;D;GEO | Absent |
Significance: 0.0500328 |
| naiveT_SPLND;CD4+;D;GEO | Absent |
Significance: 0.040121300000000006 |
| Treg;CD4+_CD25+;D;GEO | Absent |
Significance: 0.00432443 |
| apTreg;D;GEO | Absent |
Significance: 0.0137376 |
| immatureB_SPLND;CD43-_CD11b-;D;GEO | Absent |
Significance: 0.051469900000000006 |
| wES;WHL_BRN;E14.5;D;GEO | Absent |
Significance: 0.034123400000000005 |
| NIH3T3_FBROBLST;D;En | Absent |
Significance: 0.00660819 |
| KDNY;P0;D;En | Absent |
Significance: 0.033382300000000004 |
| KDNY;8wks;D;En | Absent |
Significance: 0.04555069999999999 |
| LNG;8wks;D;En | Absent |
Significance: 0.048119199999999994 |
| LNG;P0;D;En | Absent |
Significance: 0.0340175 |
| Heart;8wks;D;En | Absent |
Significance: 0.00738484 |
| Heart;P0;D;En | Absent |
Significance: 0.0423775 |
| wES;RTN;E11.5;D;En | Absent |
Significance: 0.053292 |
| CRBLM;D;En | Absent |
Significance: 0.056920000000000005 |
| apTreg;8wk;D;En | Absent |
Significance: 0.0310535 |
| EP;c-kit+CD71+Ter119+;D;En | Absent |
Significance: 0.0218257 |
| immatureB_SPLND;CD43-_CD11b-;D;En | Absent |
Significance: 0.0120853 |
| wES;MSDRM;E11.5;D;En | Absent |
Significance: 0.0463978 |
| wES.Fr_BRN;E14.4;D;En | Absent |
Significance: 0.024892400000000002 |
| Fr_BRN;P0;D;En | Absent |
Significance: 0.050874800000000005 |
| Hnd_BRN;P0;D;En | Absent |
Significance: 0.038934199999999995 |
| wES;Hnd_BRN;E14.5;D;En | Absent |
Significance: 0.0161398 |
| wES;Md_BRN;E11.5;D;En | Absent |
Significance: 0.0527476 |
| Md_BRN;D;En | Absent |
Significance: 0.031777299999999994 |
| wES;WHL_BRN;E14.5;D;En | Absent |
Significance: 0.0444032 |
| wES;limb;E14.5;D;En | Absent |
Significance: 0.0455841 |
| wES;limb;E11.5;D;En | Absent |
Significance: 0.0456423 |
| wES;Hnd_lmb;E11.5;D;En | Absent |
Significance: 0.00864371 |
| wES;FaceP;E11.5;D;En | Absent |
Significance: 0.0454486 |
| wES;NRL_Tube;E11.5;D;En | Absent |
Significance: 0.0126095 |
| STMCH;P0;D;En | Absent |
Significance: 0.0151183 |
| SKLTL_Muscle;8wks;D;En | Absent |
Significance: 0.0191291 |
| 416B;HMTP_SPNSN;CD34+;D;En | Absent |
Significance: 0.048667400000000006 |
| CH12.LX;D;En | Absent |
Significance: 0.047895 |
| NIH3T3;D;En | Absent |
Significance: 0.0275061 |