# Parameters
data_name = "Hoxb9"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:01,034 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxb9: Motif: M00410_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxb9: #6

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.011088899999999999 / Pattern: metacluster_0/pattern_5 Significance: 0.0027295	Pattern: motif8.motif Significance: 0.000384435
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00514658 / Pattern: metacluster_0/pattern_3 Significance: 0.020517700000000003	Pattern: motif5.motif Significance: 0.00385232
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00038659400000000003	Pattern: motif4.motif Significance: 0.000350679
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0123869	Pattern: motif2.motif Significance: 0.0463649
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.0183319	Pattern: motif15.motif Significance: 0.0126792
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.00024701599999999997	Pattern: motif3.motif Significance: 0.00297139

Unique Cell types only TF-MoDISco finds Hoxb9: #8

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.028569400000000002	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0247861 / Pattern: metacluster_1/pattern_13 Significance: 0.024400099999999997	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00716607	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_22 Significance: 0.032548400000000005	Absent
LNG_TRM_HSC;A;CL	Pattern: metacluster_1/pattern_20 Significance: 0.0301952	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 4.06477e-05	Absent
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.035394199999999994	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0489093	Absent

Unique Cell types only Homer finds Hoxb9: #1

Cell type	Modisco	Homer
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.000268048