In [1]:
# Parameters
data_name = "Hoxa3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:14,835 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxa3: Motif: M00172_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa3: #18

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000629349

Pattern: motif8.motif

Significance: 0.0196683

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00025361599999999997

Pattern: motif3.motif

Significance: 0.0514808

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0120251

Pattern: motif3.motif

Significance: 0.044851199999999994

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00618276

Pattern: motif9.motif

Significance: 0.0118633

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0139393

Pattern: motif6.motif

Significance: 0.0340602

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00313326

Pattern: motif2.motif

Significance: 0.0103891

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00268976

Pattern: motif3.motif

Significance: 0.015245400000000001

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.042789

Pattern: motif3.motif

Significance: 0.0209787

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00925551

Pattern: motif13.motif

Significance: 0.0235458

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00495695

Pattern: motif4.motif

Significance: 0.0148494

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00359054

Pattern: motif2.motif

Significance: 0.013830100000000001

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0038116

Pattern: motif2.motif

Significance: 0.0121875

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0399621

Pattern: motif10.motif

Significance: 0.055045699999999996

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011554799999999999

Pattern: motif14.motif

Significance: 0.017439

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.05885599999999999

Pattern: motif13.motif

Significance: 0.0368034

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00570961

Pattern: motif6.motif

Significance: 0.053161400000000004

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0237949

Pattern: motif16.motif

Significance: 0.0451021

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00289034

Pattern: motif2.motif

Significance: 0.0152357

Unique Cell types only TF-MoDISco finds Hoxa3: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00665141

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.029635200000000004

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000681669

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.04917609999999999

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0029624000000000004

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.051521300000000006

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 5.061830000000001e-06

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0584442

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0468541

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0373008

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 5.2466800000000004e-05

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.050300199999999996

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.016833599999999997

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0444967

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0364348

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0184238

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.024766800000000002

Absent
Unique Cell types only Homer finds Hoxa3: #7

Cell typeModiscoHomer
LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0196037

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.047455000000000004

LVR;8wks;D;GEOAbsent

Pattern: motif4.motif

Significance: 0.055953699999999995

SML_INTSTN;A;CLAbsent

Pattern: motif3.motif

Significance: 0.038211400000000006

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.023455700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.038033

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0317767