# Parameters
data_name = "Nr4a1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:25:54,046 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Cell type	Modisco	Homer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO	Pattern: metacluster_1/pattern_17 Significance: 0.00823779	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_22 Significance: 0.0556775	Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO	Pattern: metacluster_0/pattern_17 Significance: 0.0252319	Absent
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.058513800000000005	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_15 Significance: 0.0241845	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.053231600000000004	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0542436	Absent
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.0161642	Absent
ES;J1;A;CL	Pattern: metacluster_1/pattern_12 Significance: 0.056084	Absent
wES;posterior;1;E9.5;A;GEO	Pattern: metacluster_1/pattern_12 Significance: 0.016623500000000003	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_8 Significance: 0.0108664	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 0.0512891	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_22 Significance: 0.0407977	Absent
CD4+CD8-TCR+CD25+Foxp3+;A;CL	Pattern: metacluster_1/pattern_14 Significance: 0.0520505	Absent
ILC2+IL33+IL25;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.051454	Absent
T_LCMV;CD8+;D35;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00877288	Absent
Melanotrope;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0493394	Absent
Muscle;A;CL	Pattern: metacluster_1/pattern_21 Significance: 0.00920034	Absent