In [1]:
# Parameters
data_name = "Dbx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:01:05,248 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Dbx2: Motif: M00499_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Dbx2: #15

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.009348100000000002

Pattern: motif4.motif

Significance: 0.00869969

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00647568

Pattern: motif5.motif

Significance: 0.0356916

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00536685

Pattern: motif3.motif

Significance: 0.00470116

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0389334

Pattern: motif3.motif

Significance: 0.028327999999999996

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.017677099999999998

Pattern: motif9.motif

Significance: 0.0245882

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0486906

Pattern: motif3.motif

Significance: 0.0109044

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.014534799999999999

Pattern: motif2.motif

Significance: 0.0370505

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0114377

Pattern: motif3.motif

Significance: 0.0333328

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0180738

Pattern: motif13.motif

Significance: 0.037546800000000005

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0260434

Pattern: motif4.motif

Significance: 0.027291200000000005

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0124788

Pattern: motif2.motif

Significance: 0.0331361

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.012521899999999999

Pattern: motif2.motif

Significance: 0.033911800000000006

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.019498500000000002

Pattern: motif3.motif

Significance: 0.0303488

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0355356

Pattern: motif14.motif

Significance: 0.027291000000000003

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0110084

Pattern: motif2.motif

Significance: 0.028976599999999995

Unique Cell types only TF-MoDISco finds Dbx2: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.049529699999999996

/

Pattern: metacluster_0/pattern_25

Significance: 0.00518385

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0317059

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00464817

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00196931

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.018415900000000002

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0293974

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0496346

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0553877

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0216887

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0505043

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.015953799999999997

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.014048699999999999

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013289600000000002

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.021405700000000003

Absent
Unique Cell types only Homer finds Dbx2: #2

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0513784

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.036724400000000004