In [1]:
# Parameters
data_name = "Esrrb"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:05:42,336 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Esrrb: Motif: M00815_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Esrrb: #13

Cell typeModiscoHomer
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.032108199999999996

Pattern: motif18.motif

Significance: 0.0486814

npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.000581089

Pattern: motif32.motif

Significance: 0.00106588

ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.00216308

Pattern: motif14.motif

Significance: 0.0200965

ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_12

Significance: 9.88993e-05

Pattern: motif12.motif

Significance: 0.00936355

ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0008080110000000001

Pattern: motif14.motif

Significance: 0.04648719999999999

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0499015

Pattern: motif19.motif

Significance: 0.05950219999999999

ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.03733

Pattern: motif19.motif

Significance: 0.000795495

npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00020989200000000002

Pattern: motif14.motif

Significance: 0.00919085

ES;E14;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.00103814

/

Pattern: metacluster_1/pattern_19

Significance: 0.0127614

Pattern: motif23.motif

Significance: 0.0585054

ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00484486

Pattern: motif22.motif

Significance: 0.0298404

Adrenal;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0006707000000000001

/

Pattern: metacluster_1/pattern_15

Significance: 0.00333876

Pattern: motif2.motif

Significance: 0.00436505

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.054093499999999996

Pattern: motif12.motif

Significance: 0.05183340000000001

ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00188687

Pattern: motif18.motif

Significance: 0.0208822

Unique Cell types only TF-MoDISco finds Esrrb: #24

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.0492135

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.0348483

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0174672

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.00802593

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0326039

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.046472

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.040097100000000004

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0393972

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0542071

/

Pattern: metacluster_0/pattern_15

Significance: 0.029905900000000003

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0528722

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0527362

/

Pattern: metacluster_0/pattern_21

Significance: 0.0576871

Absent
CD4+CD8-TCR+CD25-Foxp3+;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.045826099999999995

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.037448800000000004

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.049161699999999996

/

Pattern: metacluster_1/pattern_17

Significance: 0.00633964

Absent
416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.00212493

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.049071699999999996

Absent
LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.052784300000000006

Absent
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_15

Significance: 0.0426923

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0004561

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.00869762

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.022487599999999996

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.00153443

Absent
416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.0009566280000000001

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0505892

Absent
Unique Cell types only Homer finds Esrrb: #2

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0544115

Adipocyte_3T3-L1D;C57BL6;D8;D;EnAbsent

Pattern: motif10.motif

Significance: 0.0257789