In [1]:
# Parameters
data_name = "Prdm16"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:29:55,317 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Prdm16: Motif: M08997_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Prdm16: #8

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_14

Significance: 0.0061183999999999995

Pattern: motif20.motif

Significance: 0.0238062

preB;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.00132181

Pattern: motif13.motif

Significance: 0.018683

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.019035299999999998

Pattern: motif19.motif

Significance: 0.0561544

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00357418

Pattern: motif8.motif

Significance: 0.0448358

CH12.LX;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.028704

Pattern: motif6.motif

Significance: 0.0176134

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.015267300000000001

Pattern: motif20.motif

Significance: 0.0009725980000000001

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00518506

Pattern: motif5.motif

Significance: 0.020054699999999998

MN1;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.00584257

Pattern: motif7.motif

Significance: 0.0203519

Unique Cell types only TF-MoDISco finds Prdm16: #34

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_21

Significance: 0.0169083

Absent
proB;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.00171219

Absent
immatureB;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.0199847

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05557140000000001

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.00262638

Absent
prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00723589

Absent
GC_B;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00660708

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_27

Significance: 0.0088229

Absent
aB_LPS;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0183117

Absent
B_SPLND;A;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.00451719

Absent
aB_LPS+IL21;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.00415832

Absent
aB_LSP+a_d_dextran;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.00612708

Absent
preB_BMD;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00332192

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.056322800000000006

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.00250548

Absent
3T3-L1;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.000239623

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.0159739

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.017632299999999997

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.034538

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.010549700000000002

Absent
SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0184958

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_15

Significance: 0.0403204

Absent
aB_LPS+IL4+Oligomycin_24h;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.050653199999999995

Absent
wCH12;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.00229088

Absent
CH12;med14;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.00638628

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_22

Significance: 0.035806199999999996

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.033676099999999994

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.00287733

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.00534068

/

Pattern: metacluster_1/pattern_20

Significance: 0.032646

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.027246299999999998

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.00978378

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.023078799999999997

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.00594902

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.014560499999999999

/

Pattern: metacluster_1/pattern_21

Significance: 4.67509e-05

Absent
No Cell types only Homer finds Prdm16