In [1]:
# Parameters
data_name = "Mecp2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:19:06,177 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Mecp2: Motif: M09259_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Mecp2
Unique Cell types only TF-MoDISco finds Mecp2: #4

Cell typeModiscoHomer
Mammary;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.042378

Absent
wCH12;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.044508099999999995

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.05103730000000001

Absent
aB_LPS+IL21;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0484213

Absent
Unique Cell types only Homer finds Mecp2: #7

Cell typeModiscoHomer
wES;limb;E11.5;D;EnAbsent

Pattern: motif20.motif

Significance: 0.02628

wES;posterior;2;E9.5;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.0570486

LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif5.motif

Significance: 0.0142371

STMCH;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.026754900000000005

SKLTL_Muscle;8wks;D;EnAbsent

Pattern: motif8.motif

Significance: 0.057567999999999994

SML_INTSTN;A;CLAbsent

Pattern: motif4.motif

Significance: 0.0213634

wES;Hnd_BRN;E11.5;D;EnAbsent

Pattern: motif14.motif

Significance: 0.0518529