In [1]:
# Parameters
data_name = "Lhx8"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:18:03,617 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Lhx8: Motif: M03289_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Lhx8: #22

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00654237

Pattern: motif4.motif

Significance: 0.051075999999999996

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00239852

Pattern: motif5.motif

Significance: 0.0579026

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00246246

Pattern: motif3.motif

Significance: 0.040864599999999994

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0379366

Pattern: motif14.motif

Significance: 0.0544563

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0449756

Pattern: motif6.motif

Significance: 0.021476

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.044040300000000004

Pattern: motif13.motif

Significance: 0.011833100000000001

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0269212

Pattern: motif16.motif

Significance: 0.0139832

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00618276

Pattern: motif9.motif

Significance: 0.0159733

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.052355200000000005

Pattern: motif3.motif

Significance: 0.0333117

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.011448200000000002

Pattern: motif13.motif

Significance: 0.015007

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.023455700000000003

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00342094

Pattern: motif2.motif

Significance: 0.00369074

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0139393

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00321646

Pattern: motif2.motif

Significance: 0.00378096

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00284797

Pattern: motif3.motif

Significance: 0.00382739

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00449257

Pattern: motif4.motif

Significance: 0.0145689

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00539578

Pattern: motif2.motif

Significance: 0.00323382

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.024624700000000003

Pattern: motif10.motif

Significance: 0.0136471

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00784446

Pattern: motif3.motif

Significance: 0.026474

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.005486199999999999

Pattern: motif6.motif

Significance: 0.0130058

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.023939

Pattern: motif14.motif

Significance: 0.035013199999999994

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00382321

Pattern: motif2.motif

Significance: 0.00400117

Unique Cell types only TF-MoDISco finds Lhx8: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0374966

/

Pattern: metacluster_0/pattern_25

Significance: 0.041044599999999994

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0363051

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00390776

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.013014500000000002

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.051662900000000005

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0358204

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.043975099999999996

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.040657900000000004

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.031964400000000004

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.014774

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0444967

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05354640000000001

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00337431

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0325125

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0253435

Absent
Unique Cell types only Homer finds Lhx8: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0419134

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0427584

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0566153

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0363809

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.0329246

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0112023