# Parameters
data_name = "Sox3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Sox3: #23
| Cell type | Modisco | Homer |
|---|---|---|
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.000232988 |
Significance: 0.0226489 |
| ENDRM_ESD;A;GEO |
Significance: 0.00674688 |
Significance: 0.00569875 |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.000167283 |
Significance: 0.000164782 |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.00013167299999999998 |
Significance: 6.63026e-05 |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.00011450200000000001 |
Significance: 0.00010964899999999999 |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 9.8204e-05 |
Significance: 0.00289046 |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.00011447200000000001 |
Significance: 0.000339289 |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.000169967 |
Significance: 0.00399169 |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 6.0011400000000006e-05 |
Significance: 3.1062199999999995e-05 |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.00011486200000000001 |
Significance: 0.022268299999999998 |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.00022302200000000002 |
Significance: 1.60181e-05 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.00142997 |
Significance: 0.00291754 |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.000225943 |
Significance: 0.00302433 |
| NPC;F129;A;GEO |
Significance: 0.00130416 |
Significance: 0.00821848 |
| NPC;Ch13;A;GEO |
Significance: 7.29288e-05 |
Significance: 0.00961532 |
| NPC;mE6;A;GEO |
Significance: 1.94952e-05 |
Significance: 0.0189149 |
| ES;E14;A;CL |
Significance: 0.030695799999999995 |
Significance: 0.0347236 |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.00141559 |
Significance: 0.041231300000000005 |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.00724777 |
Significance: 0.00250399 |
| wES;RTN;E11.5;D;En |
Significance: 0.000129938 |
Significance: 0.00501142 |
| Muller;P12;D;En |
Significance: 0.00145457 |
Significance: 0.043644800000000004 |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.000286264 |
Significance: 0.00211327 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.000166007 |
Significance: 0.00329083 |
Unique Cell types only TF-MoDISco finds Sox3: #51
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.010078799999999999 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.00340214 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.00581635 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00302883 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.00292146 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.00552292 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0009548730000000001 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0502382 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.00682042 | Absent |
| NPC;G4;A;GEO |
Significance: 0.000828603 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.000950056 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.00329485 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.019965 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.00569736 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0456271 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0227724 | Absent |
| Mammary;A;CL |
Significance: 0.001263 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.024941400000000002 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.000395534 | Absent |
| placenta;A;CL |
Significance: 0.055171300000000006 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.00680862 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.00732306 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.00258954 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.00794456 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.028326 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00795982 | Absent |
| ES;D0;D;GEO |
Significance: 0.0350765 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.011974 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.00142796 | Absent |
| ES;E14;D;En |
Significance: 0.0465039 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0009544460000000001 | Absent |
| KDNY;P0;D;En |
Significance: 0.052834000000000006 | Absent |
| ES;J1;A;CL |
Significance: 0.0368573 | Absent |
| ES;E14;A;GEO |
Significance: 0.0152451 | Absent |
| ES;F1216;A;GEO |
Significance: 3.91971e-05 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.0362346 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.015419899999999999 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.00186531 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.024758099999999998 | Absent |
| Adipose;D;En |
Significance: 0.00208312 | Absent |
| RTN;D1;D;En |
Significance: 3.48899e-05 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.000562056 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.00186989 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.00107324 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.00348597 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00015593899999999999 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.00187341 | Absent |
| Md_BRN;D;En |
Significance: 0.0018777999999999998 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.00361468 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.00299278 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.00610468 | Absent |
