In [1]:
# Parameters
data_name = "Myf6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:21:27,383 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Myf6: Motif: M01742_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Myf6: #30

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.05664119999999999

Pattern: motif5.motif

Significance: 0.017572400000000002

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0403247

Pattern: motif12.motif

Significance: 0.052213999999999997

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.033387099999999996

Pattern: motif5.motif

Significance: 0.016159899999999998

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0206748

Pattern: motif15.motif

Significance: 0.0523702

preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.035016900000000004

Pattern: motif12.motif

Significance: 0.05362130000000001

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.03912619999999999

Pattern: motif15.motif

Significance: 0.0336151

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.010893799999999999

Pattern: motif10.motif

Significance: 0.0204815

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.040053500000000006

Pattern: motif22.motif

Significance: 0.023848599999999998

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0360466

Pattern: motif9.motif

Significance: 0.0241587

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.010160700000000002

Pattern: motif9.motif

Significance: 0.00858992

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0463458

/

Pattern: metacluster_1/pattern_18

Significance: 0.022455700000000002

Pattern: motif11.motif

Significance: 0.0363508

largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.012180400000000001

Pattern: motif18.motif

Significance: 0.021333

smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0117015

Pattern: motif13.motif

Significance: 0.00693936

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00454242

Pattern: motif10.motif

Significance: 0.0211572

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00244065

Pattern: motif9.motif

Significance: 0.0352736

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00347651

Pattern: motif13.motif

Significance: 0.0210132

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.044253

Pattern: motif11.motif

Significance: 0.0273983

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.013592600000000002

Pattern: motif17.motif

Significance: 0.0232814

iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00758802

Pattern: motif3.motif

Significance: 0.0128835

DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0170666

Pattern: motif7.motif

Significance: 0.0265288

ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0371185

Pattern: motif14.motif

Significance: 0.0110321

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0171182

Pattern: motif2.motif

Significance: 0.05508480000000001

Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00802303

Pattern: motif19.motif

Significance: 0.0473172

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.03649430000000001

Pattern: motif13.motif

Significance: 0.054621800000000005

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0569048

Pattern: motif15.motif

Significance: 0.0241761

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.042852

Pattern: motif18.motif

Significance: 0.0362395

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0585608

Pattern: motif2.motif

Significance: 0.054386699999999996

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0540564

Pattern: motif16.motif

Significance: 0.0255753

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.019331

Pattern: motif4.motif

Significance: 0.0354644

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0384834

Pattern: motif19.motif

Significance: 0.05435449999999999

Unique Cell types only TF-MoDISco finds Myf6: #30

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0569731

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_19

Significance: 0.0345565

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.05041369999999999

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0255333

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0357236

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.00959045

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0114479

/

Pattern: metacluster_0/pattern_22

Significance: 0.049124

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0564985

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.05211609999999999

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0154222

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.027538599999999996

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.035496

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0394979

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0222751

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0593061

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.05953680000000001

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0518394

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0388597

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.0549001

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0494373

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.057357000000000005

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0325204

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.042715699999999995

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.022137900000000002

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.054037

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.054601800000000006

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.030202999999999997

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.034448900000000005

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0262502

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0506764

Absent
Unique Cell types only Homer finds Myf6: #5

Cell typeModiscoHomer
wES;LNG;E14.5;D;EnAbsent

Pattern: motif13.motif

Significance: 0.0310685

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif7.motif

Significance: 0.0532775

A20;B-lymphoma;D;EnAbsent

Pattern: motif13.motif

Significance: 0.0209734

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.0161757

G_NRN_P;A;GEOAbsent

Pattern: motif5.motif

Significance: 0.0312434