In [1]:
# Parameters
data_name = "Foxc2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:22,404 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxc2: Motif: M00796_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxc2: #9

Cell typeModiscoHomer
LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0141082

/

Pattern: metacluster_0/pattern_13

Significance: 4.17055e-05

/

Pattern: metacluster_0/pattern_14

Significance: 0.0588259

Pattern: motif7.motif

Significance: 6.9306e-05

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 6.52454e-05

Pattern: motif5.motif

Significance: 0.000529321

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 1.0381300000000002e-05

Pattern: motif5.motif

Significance: 6.483380000000001e-06

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 9.906200000000001e-05

Pattern: motif11.motif

Significance: 0.0387041

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.000544313

Pattern: motif15.motif

Significance: 0.00365859

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00013157299999999998

/

Pattern: metacluster_1/pattern_10

Significance: 0.0157406

Pattern: motif3.motif

Significance: 7.83526e-05

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 1.18943e-05

Pattern: motif4.motif

Significance: 0.0010062

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 6.772600000000001e-05

Pattern: motif6.motif

Significance: 0.00668431

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 2.8510900000000002e-05

Pattern: motif5.motif

Significance: 0.000222256

Unique Cell types only TF-MoDISco finds Foxc2: #24

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00046506900000000003

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00225349

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00216814

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000797072

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00107788

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 2.0849499999999997e-05

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000170318

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.000553242

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.000937699

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 5.1794799999999994e-05

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000191954

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0009953289999999999

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0016750999999999997

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.007459100000000001

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.00017022400000000002

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.000315713

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.00519567

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00857837

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00314446

/

Pattern: metacluster_1/pattern_21

Significance: 0.0374548

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00248067

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.000566859

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 1.69973e-05

/

Pattern: metacluster_1/pattern_18

Significance: 0.00881725

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.000599933

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.000729037

Absent
No Cell types only Homer finds Foxc2