# Parameters
data_name = "Mafb"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:18:38,394 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 0.00266738 |
Significance: 0.0320227 |
naiveCD8;A;CL |
Significance: 0.00679703 |
Significance: 0.027833499999999997 |
memT;CD4+;A;CL |
Significance: 0.0135543 |
Significance: 0.0506111 |
Th17;CD4+;A;CL |
Significance: 0.029992599999999998 |
Significance: 0.0352403 |
BSPHL;A;CL |
Significance: 0.014890200000000001 |
Significance: 0.017060299999999997 |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.00725154 |
Significance: 0.0364046 |
NTRPHL;A;CL |
Significance: 0.00275545 |
Significance: 0.04083030000000001 |
Tfh;A;CL |
Significance: 0.00336826 |
Significance: 0.0348645 |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0110285 |
Significance: 0.0353838 |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.0125427 |
Significance: 0.029143400000000003 |
DC_BMD;A;CL |
Significance: 0.0141695 |
Significance: 0.0360681 |
MCRPHG;A;CL |
Significance: 0.021782 |
Significance: 0.00865364 |
Erythroblast;A;CL |
Significance: 0.00244214 |
Significance: 0.012069400000000001 |
ES;MEF;A;CL |
Significance: 0.0482031 |
Significance: 0.0390568 |
Muscle;A;CL |
Significance: 0.0342524 |
Significance: 0.0121764 |
Heart;D;En |
Significance: 0.0183441 |
Significance: 0.00449156 |
Adrenal;A;CL |
Significance: 0.0208421 |
Significance: 0.0159155 |
placenta;A;CL |
Significance: 0.0124136 |
Significance: 0.028970599999999996 |
BRN;OLFTRY_BLB;A;CL |
Significance: 0.00874109 |
Significance: 0.0265005 |
BRN;FRNTL_CRTX;A;CL |
Significance: 0.027598400000000002 |
Significance: 0.0266015 |
BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00756691 |
Significance: 0.0439784 |
gamma_delta_TCR;A;CL |
Significance: 0.019358 |
Significance: 0.00571246 |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0108089 |
Significance: 0.0515992 |
NCR+ILC3;A;CL |
Significance: 0.0070997 |
Significance: 0.013253299999999999 |
ILC2_Nippo;A;CL |
Significance: 0.00678174 |
Significance: 0.033467199999999996 |
NCR+ILC3+IL23;A;CL |
Significance: 0.045880000000000004 |
Significance: 0.0221032 |
Th2_nippo;A;CL |
Significance: 0.030176400000000003 |
Significance: 0.0291952 |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.00894137 |
Significance: 0.045687 |
NTRPHL;A;GEO |
Significance: 0.0151583 |
Significance: 0.053299400000000004 |
ES;v6.5;A;GEO |
Significance: 0.008272700000000001 |
Significance: 0.0130815 |
Mammary_GLND;A;GEO |
Significance: 0.017673400000000002 |
Significance: 0.00750981 |
ILC2+IL33+IL25;A;GEO |
Significance: 0.010287600000000001 |
Significance: 0.0568711 |
ILC1;A;GEO |
Significance: 0.0112359 |
Significance: 0.0275735 |
ILC2;A;GEO |
Significance: 0.0071729 |
Significance: 0.0186669 |
ILC3;A;GEO |
Significance: 0.0162722 |
Significance: 0.0441159 |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.0580337 |
Significance: 0.0391597 |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.011846700000000002 |
Significance: 0.027538999999999998 |
TSLEC_SPLND;CD8+A;GEO |
Significance: 0.036101 |
Significance: 0.049009500000000004 |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.016733099999999997 |
Significance: 0.0400983 |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.012980000000000002 |
Significance: 0.0495496 |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0175955 |
Significance: 0.034229699999999995 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.045598900000000005 |
Significance: 0.0300263 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.011271600000000001 |
Significance: 0.0312646 |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.015471100000000002 |
Significance: 0.0524075 |
aB;A;GEO |
Significance: 0.026817200000000003 |
Significance: 0.0411787 |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.045558 |
Significance: 0.0267828 |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.0560835 |
Significance: 0.00922085 |
Erythroid;Ter119+;A;GEO |
Significance: 0.00260386 |
Significance: 9.896360000000001e-05 |
AML;AE9a;A;GEO |
Significance: 0.00333799 |
Significance: 0.000360264 |
DC_LPS;2h;A;GEO |
Significance: 0.022503400000000003 |
Significance: 0.004703100000000001 |
DC_pBMD;A;GEO |
Significance: 0.0535659 |
Significance: 0.036300099999999995 |
wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.00494871 |
Significance: 0.0228241 |
SKN_EPTHL;A;GEO |
Significance: 0.014466399999999999 |
Significance: 0.00483559 |
NPC;G4;A;GEO |
Significance: 0.0415885 |
Significance: 0.046023800000000004 |
NPC;Ch13;A;GEO |
Significance: 0.019235 |
Significance: 0.0136185 |
ePyramidal_NRN;A;GEO |
Significance: 0.0302551 |
Significance: 0.0497122 |
iPV_NRN;A;GEO |
Significance: 0.021889 |
Significance: 0.0342723 |
eCortical_NRN;A;GEO |
Significance: 0.0196729 |
Significance: 0.0487487 |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.00279844 |
Significance: 0.0413233 |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.00272662 |
Significance: 0.045801800000000004 |
Mammary_BptfKO;A;GEO |
Significance: 0.0310649 |
Significance: 0.059358900000000006 |
EPP;A;En |
Significance: 0.00174608 |
Significance: 0.008695399999999999 |
MegEP;A;CL |
Significance: 0.00280096 |
Significance: 0.0523664 |
pErythroblast;A;En |
Significance: 0.00397282 |
Significance: 0.023157499999999998 |
MegP;A;En |
Significance: 0.00335367 |
Significance: 0.0131125 |
pCMP;A;CL |
Significance: 0.00345685 |
Significance: 0.029320799999999998 |
DC_LPS;4h;A;En |
Significance: 0.023676 |
Significance: 0.032481499999999996 |
DC;A;En |
Significance: 0.0482423 |
Significance: 0.0127547 |
ES;ZhBTc4;1;D;GEO |
Significance: 0.00170964 |
Significance: 0.00023965099999999999 |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.00555069 |
Significance: 0.0177601 |
3134_mammaryADNCRCNM;D;GE |
Significance: 0.0585005 |
Significance: 0.0154675 |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00733922 |
Significance: 0.0408901 |
WHL_BRN;8wks;D;GEO |
Significance: 0.00470247 |
Significance: 0.0391996 |
NIH3T3_FBROBLST;D;En |
Significance: 0.0571799 |
Significance: 0.020615599999999998 |
FBRBLST;8wks;D;En |
Significance: 0.00551862 |
Significance: 0.0228834 |
3T3-L1;FBRBLST;D;En |
Significance: 0.0433517 |
Significance: 0.0304411 |
wES;LVR;E11.5;D.;En |
Significance: 0.00324819 |
Significance: 0.00683728 |
LNG;8wks;D;En |
Significance: 0.00352344 |
Significance: 0.0449001 |
LNG;P0;D;En |
Significance: 0.00559504 |
Significance: 0.0406525 |
Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00410183 |
Significance: 0.033918199999999996 |
Adipose;D;En |
Significance: 0.0380615 |
Significance: 0.025442199999999998 |
EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.00365281 |
Significance: 0.0052918 |
416B_MP;CD34+;D;En |
Significance: 0.00994697 |
Significance: 0.00742266 |
Md_BRN;D;En |
Significance: 0.011377 |
Significance: 0.0230211 |
WHL_BRN;8wks;D;En |
Significance: 0.0582075 |
Significance: 0.0458125 |
wES;FaceP;E14.5;D;En |
Significance: 0.0175292 |
Significance: 0.05558330000000001 |
STMCH;P0;D;En |
Significance: 0.012039200000000002 |
Significance: 0.032393200000000004 |
SKLTL_Muscle;8wks;D;En |
Significance: 0.00936447 |
Significance: 0.00840745 |
3134_mammaryADNCRCNM;D;En |
Significance: 0.0536581 |
Significance: 0.020680599999999997 |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.027291500000000003 |
Significance: 0.00229135 |
AML;D;En |
Significance: 0.011513899999999999 |
Significance: 0.0498574 |
CH12.LX;D;En |
Significance: 0.0118872 |
Significance: 0.0598368 |
MEF.GATA-1-ER;D;En |
Significance: 0.00491845 |
Significance: 0.000510625 |
MEL;D;En |
Significance: 0.00248318 |
Significance: 0.05061740000000001 |
NIH3T3;D;En |
Significance: 0.0364535 |
Significance: 0.043372900000000006 |
MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0415924 |
Significance: 0.040684899999999996 |
MN1;D;En |
Significance: 0.0173498 |
Significance: 0.024687999999999998 |
3T3-L1;D;En |
Significance: 0.0384251 |
Significance: 0.029301799999999996 |
Cell type | Modisco | Homer |
---|---|---|
NK_SPLND;A;CL |
Significance: 0.010551999999999999 | Absent |
proB;A;CL |
Significance: 0.00781145 | Absent |
matureB;A;CL |
Significance: 0.027927800000000003 | Absent |
plasmaB;A;CL |
Significance: 0.0235998 | Absent |
aB_LPS;A;CL |
Significance: 0.0114259 | Absent |
aB_LSP+a_d_dextran;A;CL |
Significance: 0.00353928 | Absent |
Mast;A;CL |
Significance: 0.0180949 | Absent |
ESNPHL_SPLND_BlbCA;CL |
Significance: 0.0188223 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.0224118 | Absent |
aNonTfh_mut;A;CL |
Significance: 0.00234527 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.000981513 | Absent |
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.010406700000000001 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.03445619999999999 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.05919 | Absent |
DP;A;CL |
Significance: 0.0007991989999999999 | Absent |
DP3a;A;CL |
Significance: 0.000971199 | Absent |
DP3b;A;CL |
Significance: 0.00641657 | Absent |
ES;E14;A;CL |
Significance: 0.000386556 | Absent |
SML_INTSTN;A;CL |
Significance: 0.035818300000000004 | Absent |
LRG_INTSTN;A;CL |
Significance: 0.0109844 | Absent |
LNG;A;CL |
Significance: 0.00704583 | Absent |
Mammary;A;CL |
Significance: 0.03648730000000001 | Absent |
testis;A;CL |
Significance: 0.0410351 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.00486737 | Absent |
BRN;PTMN;A;CL |
Significance: 0.00483039 | Absent |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.00431876 | Absent |
BRN;CRBLM;A;CL |
Significance: 0.00928499 | Absent |
LNG_TRM_HSC;A;CL |
Significance: 0.00693795 | Absent |
SHRT_TRM_HSC;A;CL |
Significance: 0.00210276 | Absent |
gamma_delta_TCR_MCR;A;CL |
Significance: 0.0138101 | Absent |
NK;IL2+IL12+;A;CL |
Significance: 0.016632400000000002 | Absent |
ILC2precrsr;A;CL |
Significance: 0.0459559 | Absent |
ILC1;A;CL |
Significance: 0.0319702 | Absent |
ILC2;A;CL |
Significance: 0.0112658 | Absent |
aB_LPS+IL4_24h;A;CL |
Significance: 0.011472 | Absent |
CH12_QNTPLE;A;CL |
Significance: 0.00117027 | Absent |
wCH12;A;CL |
Significance: 0.0309538 | Absent |
CH12;med14;A;CL |
Significance: 0.0318571 | Absent |
CLP;A;CL |
Significance: 0.00644033 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0355707 | Absent |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0131392 | Absent |
ES;J1;A;CL |
Significance: 0.0086351 | Absent |
ES;E14;A;GEO |
Significance: 0.0283851 | Absent |
ES;F1216;A;GEO |
Significance: 0.035289999999999995 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.00462386 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.05634730000000001 | Absent |
ILC1_AbxGRMFree;A;GEO |
Significance: 0.0143905 | Absent |
ILC2_AbxGRMFree;A;GEO |
Significance: 0.0297882 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.05379880000000001 | Absent |
T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0172083 | Absent |
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0194915 | Absent |
iNKT;A;GEO |
Significance: 0.032278100000000004 | Absent |
prePLSM_B;A;GEO |
Significance: 0.0347471 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.023542700000000003 | Absent |
ENDRM_ESD;A;GEO |
Significance: 0.05413250000000001 | Absent |
GCN_PHT_RCPTR;A;GEO |
Significance: 0.00254576 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.00143506 | Absent |
wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0533755 | Absent |
wES;posterior;2;E9.5;A;GEO |
Significance: 0.0136314 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0030072 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0569582 | Absent |
wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.00384068 | Absent |
NPC;F129;A;GEO |
Significance: 0.00450582 | Absent |
NPC;mE6;A;GEO |
Significance: 0.036770300000000006 | Absent |
iVIP_NRN;A;GEO |
Significance: 0.00155629 | Absent |
G_NRN_P;A;GEO |
Significance: 0.01157 | Absent |
Corticotrope;A;GEO |
Significance: 0.0172202 | Absent |
Melanotrope;A;GEO |
Significance: 0.005737699999999999 | Absent |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00253978 | Absent |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.00823806 | Absent |
ES;JM8.N4;Asynch;A;GEO |
Significance: 0.000515751 | Absent |
ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.00272125 | Absent |
pMeg;A;En |
Significance: 0.00244593 | Absent |
pGMP;A;En |
Significance: 0.0020012999999999997 | Absent |
ES;ZhBTc4;2;D;GEO |
Significance: 0.00156418 | Absent |
ES;D0;D;GEO |
Significance: 0.0006037880000000001 | Absent |
LVR;8wks;D;GEO |
Significance: 0.0069156999999999995 | Absent |
LNG;8wks;D;GEO |
Significance: 0.010149 | Absent |
naiveT_SPLND;CD4+;D;GEO |
Significance: 0.00914631 | Absent |
apCD4Eff;D;GEO |
Significance: 0.0225033 | Absent |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.00147196 | Absent |
ES;E14;D;En |
Significance: 0.00111357 | Absent |
ES;C57BL_6J;R1;D;En |
Significance: 0.0021582 | Absent |
KDNY;P0;D;En |
Significance: 0.00656004 | Absent |
KDNY;8wks;D;En |
Significance: 0.00322092 | Absent |
LVR;8wks;D;En |
Significance: 0.0100903 | Absent |
LVR;P0;D;En |
Significance: 0.00700325 | Absent |
wES;LNG;E14.5;D;En |
Significance: 0.0230246 | Absent |
Heart;8wks;D;En |
Significance: 0.0321666 | Absent |
Heart;P0;D;En |
Significance: 0.014224500000000001 | Absent |
wES;RTN;E11.5;D;En |
Significance: 0.00350087 | Absent |
CRBLM;D;En |
Significance: 0.0130054 | Absent |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.014197299999999998 | Absent |
wES;MSDRM;E11.5;D;En |
Significance: 0.0335789 | Absent |
wES.Fr_BRN;E14.4;D;En |
Significance: 0.022871000000000002 | Absent |
Fr_BRN;P0;D;En |
Significance: 0.0381608 | Absent |
Hnd_BRN;P0;D;En |
Significance: 0.00447295 | Absent |
wES;Hnd_BRN;E11.5;D;En |
Significance: 0.030565699999999998 | Absent |
wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00118654 | Absent |
wES;Md_BRN;E14.4;D;En |
Significance: 0.00296862 | Absent |
wES;Md_BRN;E11.5;D;En |
Significance: 0.025156400000000002 | Absent |
wES;WHL_BRN;E14.5;D;En |
Significance: 0.036636199999999994 | Absent |
wES;Telenchephalon;D;En |
Significance: 0.001761 | Absent |
wES;limb;E14.5;D;En |
Significance: 0.045897 | Absent |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.017428799999999998 | Absent |
wES;FaceP;E11.5;D;En |
Significance: 0.00436712 | Absent |
wES;NRL_Tube;E11.5;D;En |
Significance: 0.0407385 | Absent |
LRG_INTSTN;8wks;D;En |
Significance: 0.00736436 | Absent |
MEL_Znc_di-cl;24h;D;En |
Significance: 0.00154439 | Absent |
Cell type | Modisco | Homer |
---|---|---|
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO | Absent |
Significance: 0.00967677 |
wES;posterior;1;E9.5;A;GEO | Absent |
Significance: 0.0427431 |
wES;posterior;1;E8.5;A;GEO | Absent |
Significance: 0.0548448 |
BCK_SKN;A;GEO | Absent |
Significance: 0.0439384 |
DC_LPS;6h;A;GEO | Absent |
Significance: 0.051903 |
immatureB_SPLND;CD43-_CD11b-;D;GEO | Absent |
Significance: 0.045450800000000006 |
416B_MP;CD34+;D;GEO | Absent |
Significance: 0.0162602 |
Muller;P12;D;En | Absent |
Significance: 0.0174315 |
Adipose;A;CL | Absent |
Significance: 0.034128399999999996 |
wCH12_drug;A;CL | Absent |
Significance: 0.0130711 |