In [1]:
# Parameters
data_name = "Zbtb14"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:48:55,738 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Zbtb14: Motif: M00145_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Zbtb14
Unique Cell types only TF-MoDISco finds Zbtb14: #1

Cell typeModiscoHomer
testis;A;CL

Pattern: metacluster_0/pattern_6

Significance: 0.030380900000000002

Absent
Unique Cell types only Homer finds Zbtb14: #10

Cell typeModiscoHomer
Th17;CD4+;A;CLAbsent

Pattern: motif14.motif

Significance: 0.024926300000000002

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif16.motif

Significance: 0.0243773

CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CLAbsent

Pattern: motif20.motif

Significance: 0.023009799999999997

CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;CAbsent

Pattern: motif21.motif

Significance: 0.022684

preB;A;CLAbsent

Pattern: motif15.motif

Significance: 0.022744

memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.023677200000000002

A20;B-lymphoma;D;EnAbsent

Pattern: motif13.motif

Significance: 0.031195799999999996

BSPHL;A;CLAbsent

Pattern: motif9.motif

Significance: 0.0338139

ES;MEF;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0217738

Mammary;A;CLAbsent

Pattern: motif10.motif

Significance: 0.027123599999999998