In [1]:
# Parameters
data_name = "Sox13"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:35:27,224 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Sox13: Motif: M00212_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox13: #1

Cell typeModiscoHomer
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0471294

Pattern: motif10.motif

Significance: 0.0352176

Unique Cell types only TF-MoDISco finds Sox13: #4

Cell typeModiscoHomer
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.04716819999999999

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0575631

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0584946

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0250774

Absent
Unique Cell types only Homer finds Sox13: #1

Cell typeModiscoHomer
ES;D0;D;GEOAbsent

Pattern: motif13.motif

Significance: 0.058126800000000006