In [1]:
# Parameters
data_name = "Hoxc5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:15,514 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxc5: Motif: M00422_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxc5: #12

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000537909

Pattern: motif4.motif

Significance: 0.0365843

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000740201

Pattern: motif3.motif

Significance: 0.0244294

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00618276

Pattern: motif9.motif

Significance: 0.0346115

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00434305

Pattern: motif2.motif

Significance: 0.0214262

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00361966

Pattern: motif3.motif

Significance: 0.0243985

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00493475

Pattern: motif13.motif

Significance: 0.0305839

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00514983

Pattern: motif4.motif

Significance: 0.0203505

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00462161

Pattern: motif2.motif

Significance: 0.022199200000000002

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00533169

Pattern: motif2.motif

Significance: 0.019429599999999998

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0530591

/

Pattern: metacluster_0/pattern_8

Significance: 0.00706021

Pattern: motif3.motif

Significance: 0.013281799999999998

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.0114831

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00381475

Pattern: motif2.motif

Significance: 0.018437799999999997

Unique Cell types only TF-MoDISco finds Hoxc5: #23

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00163214

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.043465300000000005

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0553317

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0569952

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00921491

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0059272

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00740543

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.027558

/

Pattern: metacluster_0/pattern_25

Significance: 0.00494931

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00741547

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0521086

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0163415

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00392307

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.013506

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.000197315

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.051103300000000004

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.031157099999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.036853199999999996

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00840005

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00963489

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 5.2466800000000004e-05

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023568900000000004

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00474438

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00469654

Absent
Unique Cell types only Homer finds Hoxc5: #2

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0597203

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0400487