# Parameters
data_name = "Rfx7"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:31:50,453 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
wES;limb;E14.5;D;En |
Significance: 0.00553847 |
Significance: 0.013521100000000001 |
wES;limb;E11.5;D;En |
Significance: 0.00593062 |
Significance: 0.0221405 |
wES;Fr_lmb;E11.5;D;En |
Significance: 0.0102388 |
Significance: 0.036076199999999996 |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.015628 |
Significance: 0.0233577 |
wES;FaceP;E14.5;D;En |
Significance: 0.0066577 |
Significance: 0.016578700000000002 |
wES;FaceP;E11.5;D;En |
Significance: 0.00302513 |
Significance: 0.0240451 |
wES;NRL_Tube;E11.5;D;En |
Significance: 0.012893100000000001 |
Significance: 0.018266099999999997 |
Spleen;8wks;D;En |
Significance: 0.00797179 |
Significance: 0.00117162 |
MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00142273 |
Significance: 0.000523782 |
MN1;D;En |
Significance: 0.00045830800000000004 |
Significance: 0.030707400000000003 |
npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.00132638 |
Significance: 0.00352111 |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00487131 |
Significance: 0.0100902 |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.00173636 |
Significance: 0.0109909 |
npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.00538288 |
Significance: 0.00635526 |
npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.000699286 |
Significance: 0.0134847 |
wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.00115845 |
Significance: 0.00509694 |
npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.00668073 |
Significance: 0.0133941 |
wES;posterior;1;E9.5;A;GEO |
Significance: 0.013045900000000001 |
Significance: 0.020234099999999998 |
wES;posterior;2;E9.5;A;GEO |
Significance: 0.0127754 |
Significance: 0.0173841 |
wES;posterior;1;E8.5;A;GEO |
Significance: 0.000522113 |
Significance: 0.00497286 |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.00595821 |
Significance: 0.00920767 |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.00168579 |
Significance: 0.011214299999999998 |
wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.00162028 |
Significance: 0.013687399999999999 |
NPC;F129;A;GEO |
Significance: 0.011654799999999998 |
Significance: 0.0109094 |
NPC;G4;A;GEO |
Significance: 0.0131218 |
Significance: 0.0121562 |
NPC;Ch13;A;GEO |
Significance: 0.00243906 |
Significance: 0.0123804 |
NPC;mE6;A;GEO |
Significance: 0.0116089 |
Significance: 0.00584898 |
ePyramidal_NRN;A;GEO |
Significance: 0.0059554 |
Significance: 0.016760900000000002 |
iPV_NRN;A;GEO |
Significance: 0.0086421 |
Significance: 0.0208504 |
iVIP_NRN;A;GEO |
Significance: 0.0160956 |
Significance: 0.021024 |
eCortical_NRN;A;GEO |
Significance: 0.00464242 |
Significance: 0.0186704 |
G_NRN_P;A;GEO |
Significance: 0.00497473 |
Significance: 0.0591461 |
wES;GRM;E16.5;A;GEO |
Significance: 0.00489758 |
Significance: 0.04693680000000001 |
Melanotrope;A;GEO |
Significance: 0.00282013 |
Significance: 0.00635943 |
testis;A;CL |
Significance: 0.00232166 |
Significance: 0.00939154 |
BRN;OLFTRY_BLB;A;CL |
Significance: 0.0006946010000000001 |
Significance: 0.0186082 |
BRN;FRNTL_CRTX;A;CL |
Significance: 0.00352514 |
Significance: 0.0195737 |
BRN;PTMN;A;CL |
Significance: 0.00578354 |
Significance: 0.0125935 |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.00179761 |
Significance: 0.016915700000000002 |
BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00250549 |
Significance: 0.0197512 |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00105168 |
Significance: 0.000965539 |
naiveT_SPLND;CD4+;D;GEO |
Significance: 0.000433897 |
Significance: 2.4664699999999998e-05 |
WHL_BRN;8wks;D;GEO |
Significance: 0.0120869 |
Significance: 0.013269799999999998 |
wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.00866966 |
Significance: 0.00797274 |
ES;C57BL_6J;R1;D;En |
Significance: 0.00160188 |
Significance: 0.0127337 |
ES;v6.5;A;GEO |
Significance: 0.00289365 |
Significance: 0.006794199999999999 |
RTN;D1;D;En |
Significance: 0.00114149 |
Significance: 0.0100981 |
wES;RTN;E11.5;D;En |
Significance: 0.00168315 |
Significance: 0.0297257 |
CRBLM;D;En |
Significance: 0.0027806999999999997 |
Significance: 0.012238299999999999 |
wES;MSDRM;E11.5;D;En |
Significance: 0.00694655 |
Significance: 0.0177858 |
wES.Fr_BRN;E14.4;D;En |
Significance: 0.0102131 |
Significance: 0.0215565 |
Fr_BRN;P0;D;En |
Significance: 0.013485399999999998 |
Significance: 0.0166415 |
Hnd_BRN;P0;D;En |
Significance: 0.00708891 |
Significance: 0.015316499999999999 |
wES;Hnd_BRN;E11.5;D;En |
Significance: 0.00106445 |
Significance: 0.023702599999999997 |
wES;Hnd_BRN;E14.5;D;En |
Significance: 0.028946 |
Significance: 0.016274700000000003 |
wES;Md_BRN;E14.4;D;En |
Significance: 0.016387 |
Significance: 0.020682 |
wES;Md_BRN;E11.5;D;En |
Significance: 0.016349799999999998 |
Significance: 0.0209615 |
Md_BRN;D;En |
Significance: 0.011956 |
Significance: 0.0156985 |
wES;WHL_BRN;E14.5;D;En |
Significance: 0.0116766 |
Significance: 0.0159244 |
WHL_BRN;8wks;D;En |
Significance: 0.00752913 |
Significance: 0.00986149 |
wES;Telenchephalon;D;En |
Significance: 0.0143627 |
Significance: 0.0141092 |
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 0.0008147419999999999 | Absent |
naiveCD8;A;CL |
Significance: 0.00154081 | Absent |
memT;CD4+;A;CL |
Significance: 0.0007857189999999999 | Absent |
Th17;CD4+;A;CL |
Significance: 0.00302482 | Absent |
NK_SPLND;A;CL |
Significance: 0.000293344 | Absent |
proB;A;CL |
Significance: 0.00124885 | Absent |
preB;A;CL |
Significance: 0.000956527 | Absent |
immatureB;A;CL |
Significance: 0.000494756 | Absent |
matureB;A;CL |
Significance: 0.00291264 | Absent |
MZ_B;A;CL |
Significance: 0.00825827 | Absent |
B1_B;A;CL |
Significance: 0.000233747 | Absent |
GC_B;A;CL |
Significance: 0.00163292 | Absent |
plasmaB;A;CL |
Significance: 0.000980738 | Absent |
aB_LPS;A;CL |
Significance: 0.00226825 | Absent |
aB_LPS+IL4;A;CL |
Significance: 0.0006464880000000001 | Absent |
aB_LSP+a_d_dextran;A;CL |
Significance: 0.00201246 | Absent |
aB_CD40+IL4;A;CL |
Significance: 0.000428331 | Absent |
Mast;A;CL |
Significance: 0.00114854 | Absent |
BSPHL;A;CL |
Significance: 0.00189181 | Absent |
ESNPHL_SPLND_BlbCA;CL |
Significance: 0.000283468 | Absent |
NTRPHL;A;CL |
Significance: 0.000581583 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.000343945 | Absent |
Tfh;A;CL |
Significance: 0.00567274 | Absent |
aNonTfh;A;CL |
Significance: 0.0103073 | Absent |
aNonTfh_mut;A;CL |
Significance: 0.000280348 | Absent |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00719733 | Absent |
naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.00038830099999999997 | Absent |
naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.00037618 | Absent |
largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.000503212 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00275136 | Absent |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00749308 | Absent |
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.00160894 | Absent |
CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.00060019 | Absent |
CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.00130957 | Absent |
CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.00870846 | Absent |
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.00432098 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.020274599999999997 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00419379 | Absent |
CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.000557619 | Absent |
DC_BMD;A;CL |
Significance: 0.00470588 | Absent |
MCRPHG;A;CL |
Significance: 0.000526916 | Absent |
Erythroblast;A;CL |
Significance: 0.00375798 | Absent |
DP;A;CL |
Significance: 0.0016124000000000002 | Absent |
DP3a;A;CL |
Significance: 0.000662595 | Absent |
DP3b;A;CL |
Significance: 0.00147337 | Absent |
ISP;A;CL |
Significance: 0.000919472 | Absent |
ES;E14;A;CL |
Significance: 0.0128381 | Absent |
ES;MEF;A;CL |
Significance: 0.00032054 | Absent |
LRG_INTSTN;A;CL |
Significance: 0.00198379 | Absent |
LNG;A;CL |
Significance: 0.00251409 | Absent |
Muscle;A;CL |
Significance: 0.0165353 | Absent |
Heart;D;En |
Significance: 0.0007247760000000001 | Absent |
Adipose;A;CL |
Significance: 0.00047332900000000003 | Absent |
Adrenal;A;CL |
Significance: 0.0009108860000000001 | Absent |
placenta;A;CL |
Significance: 0.000487391 | Absent |
SPNL_CHRD;A;CL |
Significance: 0.00246247 | Absent |
STMCH;A;CL |
Significance: 0.0035586999999999997 | Absent |
PNCRS;A;CL |
Significance: 0.00331415 | Absent |
eye-NRL_RTN;A;CL |
Significance: 0.00017324099999999998 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.000298727 | Absent |
BRN;CRBLM;A;CL |
Significance: 0.0005266530000000001 | Absent |
restingB;A;CL |
Significance: 0.00104355 | Absent |
aB;CD180;A;CL |
Significance: 0.000310882 | Absent |
LNG_TRM_HSC;A;CL |
Significance: 0.00063855 | Absent |
SHRT_TRM_HSC;A;CL |
Significance: 0.000837598 | Absent |
gamma_delta_TCR;A;CL |
Significance: 0.00339054 | Absent |
gamma_delta_TCR_MCR;A;CL |
Significance: 0.00708303 | Absent |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.000211836 | Absent |
NK;IL2+IL12+;A;CL |
Significance: 0.000440146 | Absent |
ILC2precrsr;A;CL |
Significance: 0.000529718 | Absent |
NCR+ILC3;A;CL |
Significance: 0.0008201010000000001 | Absent |
ILC2_Nippo;A;CL |
Significance: 0.000435128 | Absent |
ILC1;A;CL |
Significance: 0.000964247 | Absent |
NCR+ILC3+IL23;A;CL |
Significance: 0.000487397 | Absent |
ILC2;A;CL |
Significance: 0.00208906 | Absent |
Th2_nippo;A;CL |
Significance: 0.00528189 | Absent |
aB_LPS+IL4_24h;A;CL |
Significance: 0.000371945 | Absent |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.00495321 | Absent |
CH12_QNTPLE;A;CL |
Significance: 0.00178635 | Absent |
wCH12;A;CL |
Significance: 0.00192949 | Absent |
CH12;med14;A;CL |
Significance: 0.00067774 | Absent |
wCH12_drug;A;CL |
Significance: 0.00193925 | Absent |
CLP;A;CL |
Significance: 0.00137149 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.000322519 | Absent |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.000819796 | Absent |
ES;J1;A;CL |
Significance: 0.000544373 | Absent |
ES;E14;A;GEO |
Significance: 0.012944299999999999 | Absent |
ES;F1216;A;GEO |
Significance: 0.0002108 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.000515171 | Absent |
Mammary_GLND;A;GEO |
Significance: 0.0049521 | Absent |
RTN;A;GEO |
Significance: 0.00601109 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00509722 | Absent |
ILC2+IL33+IL25;A;GEO |
Significance: 0.00385683 | Absent |
ILC1;A;GEO |
Significance: 0.00286747 | Absent |
ILC2;A;GEO |
Significance: 0.0013399 | Absent |
ILC3;A;GEO |
Significance: 0.00431377 | Absent |
ILC1_AbxGRMFree;A;GEO |
Significance: 0.000335589 | Absent |
ILC2_AbxGRMFree;A;GEO |
Significance: 0.0007879110000000001 | Absent |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.00246076 | Absent |
naiveT;CD8+;A;GEO |
Significance: 0.00191434 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.00627196 | Absent |
T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0007170760000000001 | Absent |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.00405026 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 0.0061936000000000005 | Absent |
TExh_SPLND;CD8+;A;GEO |
Significance: 0.000247051 | Absent |
TSLEC_SPLND;CD8+A;GEO |
Significance: 0.000432915 | Absent |
naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.00481161 | Absent |
Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0166372 | Absent |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0005012619999999999 | Absent |
cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.018455799999999998 | Absent |
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.00222607 | Absent |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0009515260000000001 | Absent |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00195234 | Absent |
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.00109494 | Absent |
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0005897259999999999 | Absent |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.00103576 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00037477800000000004 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.000530189 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.000473246 | Absent |
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00361829 | Absent |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00124161 | Absent |
iNKT;A;GEO |
Significance: 0.00692147 | Absent |
aB;A;GEO |
Significance: 0.000603779 | Absent |
prePLSM_B;A;GEO |
Significance: 0.0007018189999999999 | Absent |
B_SPLND;A;GEO |
Significance: 0.00431362 | Absent |
preB_BMD;A;GEO |
Significance: 0.00100565 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.000948827 | Absent |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.0006752739999999999 | Absent |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00198325 | Absent |
DC_LPS;6h;A;GEO |
Significance: 0.00123439 | Absent |
DC_LPS;2h;A;GEO |
Significance: 0.00270208 | Absent |
ENDRM_ESD;A;GEO |
Significance: 0.000806394 | Absent |
ROD_PHT_RCPTR;A;GEO |
Significance: 0.00245246 | Absent |
ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.0031814 | Absent |
GCN_PHT_RCPTR;A;GEO |
Significance: 0.00194495 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.00284988 | Absent |
CN_PHT_RCPTR;A;GEO |
Significance: 0.029827 | Absent |
SKN_EPTHL;A;GEO |
Significance: 0.00336641 | Absent |
BCK_SKN;A;GEO |
Significance: 0.00548681 | Absent |
wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.000565535 | Absent |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.00171466 | Absent |
Corticotrope;A;GEO |
Significance: 0.00024366900000000001 | Absent |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.0124565 | Absent |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.0192973 | Absent |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.00802861 | Absent |
ES;JM8.N4;Asynch;A;GEO |
Significance: 0.00241105 | Absent |
ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.00253705 | Absent |
Mammary_BptfKO;A;GEO |
Significance: 0.00042385800000000005 | Absent |
EPP;A;En |
Significance: 0.00408699 | Absent |
MegEP;A;CL |
Significance: 0.00231683 | Absent |
MegP;A;En |
Significance: 0.000734214 | Absent |
pCMP;A;CL |
Significance: 0.00227082 | Absent |
pGMP;A;En |
Significance: 0.0022559 | Absent |
ES;ZhBTc4;1;D;GEO |
Significance: 0.00109923 | Absent |
ES;ZhBTc4;2;D;GEO |
Significance: 0.00192497 | Absent |
ES;D0;D;GEO |
Significance: 0.00896681 | Absent |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.00124424 | Absent |
LNG;8wks;D;GEO |
Significance: 0.000258425 | Absent |
3134_mammaryADNCRCNM;D;GE |
Significance: 0.000396031 | Absent |
apCD4Eff;D;GEO |
Significance: 0.00723346 | Absent |
immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 0.00900075 | Absent |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.000938142 | Absent |
ES;E14;D;En |
Significance: 0.00294924 | Absent |
NIH3T3_FBROBLST;D;En |
Significance: 0.00177542 | Absent |
FBRBLST;8wks;D;En |
Significance: 0.00172938 | Absent |
3T3-L1;FBRBLST;D;En |
Significance: 0.000244942 | Absent |
KDNY;P0;D;En |
Significance: 0.004236 | Absent |
KDNY;8wks;D;En |
Significance: 0.000817805 | Absent |
wES;LVR;E11.5;D.;En |
Significance: 0.00163223 | Absent |
LVR;P0;D;En |
Significance: 0.000862563 | Absent |
LNG;8wks;D;En |
Significance: 0.00538006 | Absent |
LNG;P0;D;En |
Significance: 0.00506409 | Absent |
wES;LNG;E14.5;D;En |
Significance: 0.000772773 | Absent |
Heart;8wks;D;En |
Significance: 0.000125428 | Absent |
Heart;P0;D;En |
Significance: 0.0046122 | Absent |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00701806 | Absent |
apTreg;8wk;D;En |
Significance: 0.00136825 | Absent |
EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.000656925 | Absent |
Muller;P12;D;En |
Significance: 0.00169542 | Absent |
LRG_INTSTN;8wks;D;En |
Significance: 0.00360576 | Absent |
STMCH;P0;D;En |
Significance: 0.000281652 | Absent |
SKLTL_Muscle;8wks;D;En |
Significance: 0.00239337 | Absent |
3134_mammaryADNCRCNM;D;En |
Significance: 0.00192354 | Absent |
AML;D;En |
Significance: 0.00107013 | Absent |
CH12.LX;D;En |
Significance: 0.00301707 | Absent |
MEF.GATA-1-ER;D;En |
Significance: 0.00101619 | Absent |
NIH3T3;D;En |
Significance: 0.00911719 | Absent |
3T3-L1;D;En |
Significance: 0.0009845610000000001 | Absent |